Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ggttggttgtgactgttgagtagctttattatctgaaattaggagtttgatattgacatattttatctttgacaGCAAACAGCAGTCTGTTATTCAGCAACTTAATGCCCGCAGAGGTCGTCTGATAGTTATGTGTTCAAAAGGGGATGCTTCCTCTGTATGCCCTAATGAATC

Basic information

species Glycine max
transcript GLYMA18G47860.1
intron # 10
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|9901175|gb|BE610143.1|BE610143
EST:     GGATGAAAATCTCCCAATTGTTGTTTTAGCTACCCGTGATGCCTGCTTCA                         GCANACAGCAGTCTGTTATTCAGCAACTTAATGCCCGCAGAGGTCGTCTGA
genomic: GGATGAAAATCTCCCAATTGTTGTTTTAGCTACCCGTGATGCCTGCTTCAggttggttgt ... atctttgacaGCAAACAGCAGTCTGTTATTCAGCAACTTAATGCCCGCAGAGGTCGTCTGA
EST: gi|208294097|gb|GE092614.1|GE092614
EST:     CCCGTGATGCCTGCTTCA                         GCAAACAGCAGTCTGTTATTCAGCAACTTAATGCCCGCAGAGGTCGTCTGA
genomic: CCCGTGATGCCTGCTTCAggttggttgt ... atctttgacaGCAAACAGCAGTCTGTTATTCAGCAACTTAATGCCCGCAGAGGTCGTCTGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtagctttattatctgaaattaggagtttgatattgacatattttatctttgacaGCAAACAGCAGTCTGTTATTCAGCAACTTAATGCCCGCAGAGGTCGTCTGATAGTTATGTGTTCAAAAGGGGATGCTTCCTCTGTATGCCCTAATGAATC
                               tattgac  putative branch site (score: 2)
                                         ttttatcttt  putative PPT
                          tttgatattgacatat  TA-rich tract