1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...ataattctgtaaataaaatgcttgggactataattttagcatcaaacttttctgtctttgttgctgatgttgtgataaccattgatgacttgaatctcagACTGTTCATCCAAGTTTCGGCGAACGATACCTGTCATCTGTCCTGTTCCAAGAGCTTCGTCAAGAAGCTGAAAACATGCAGCCAGTAGCAGTTGATTAAT
species | Glycine max |
transcript | GLYMA18G46920.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: CAGCTCTCAGATTGGCTCAGCTGCCTGAGAACAAAGGCAAACTTATTGTG ACTGTTCATCCAAGTTTCGGCGAACGATACCTGTCATCTGTCCTGTTCCAAEST: gi|6719405|gb|AW307052.1|AW307052
genomic: CAGCTCTCAGATTGGCTCAGCTGCCTGAGAACAAAGGCAAACTTATTGTGgtaagaacag ... tgaatctcagACTGTTCATCCAAGTTTCGGCGAACGATACCTGTCATCTGTCCTGTTCCAA
EST: CAGCTCTCAGATTGGCTCAGCTGCCTGAGAACAAAGGCAAACTTATTGTG ACTGTTCATCCAAGTTTCGGCGAACGATACCTGTCATCTGTCCTGTTCCAAEST: gi|13482359|gb|BG511702.1|BG511702
genomic: CAGCTCTCAGATTGGCTCAGCTGCCTGAGAACAAAGGCAAACTTATTGTGgtaagaacag ... tgaatctcagACTGTTCATCCAAGTTTCGGCGAACGATACCTGTCATCTGTCCTGTTCCAA
EST: CAGCTCTCAGATTGGCTCAGCTGCCTGAGAACAAAGGCAAACTTATTGTG ACTGNTCATCCAAGTTTCGGCGAACGATACCTGTCATCTGTCCTGTTCCAA
genomic: CAGCTCTCAGATTGGCTCAGCTGCCTGAGAACAAAGGCAAACTTATTGTGgtaagaacag ... tgaatctcagACTGTTCATCCAAGTTTCGGCGAACGATACCTGTCATCTGTCCTGTTCCAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ataattctgtaaataaaatgcttgggactataattttagcatcaaacttttctgtctttgttgctgatgttgtgataaccattgatgacttgaatctcagACTGTTCATCCAAGTTTCGGCGAACGATACCTGTCATCTGTCCTGTTCCAAGAGCTTCGTCAAGAAGCTGAAAACATGCAGCCAGTAGCAGTTGATTAAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - aaataaa
- - - - - - - - - tgcttgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gctgatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgatgac