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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ggttacctgaacctaaattactattgctgtttcaaatcttttactaagaaataaaaatctgcagaactatgtttgtactattcttttgtgatgcttgattgtacttaagtttagtactagatatagttctgaaatccttggcttttacaatggtgcatttatttatatattgacttcaaatgagaatgcaGGTGCATTTTGAAACAACAGGTCCTGAGATATGGGAGGATACAAATGGACAAGTTGACATATTTGTTATGGGAATAGGTAGTGGAGGCACAGTCTCTGGG

Basic information

species Glycine max
transcript GLYMA18G46920.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|16346580|gb|BI972175.1|BI972175
EST:     ACACCAAATGCCCACATGCTGCAACAATTTTCAAACCCTGCCAATACTCA                         GGTGCATTTTGAAACAACAGGTCCTGAGATATGGGAGGATACAAATGGACA
genomic: ACACCAAATGCCCACATGCTGCAACAATTTTCAAACCCTGCCAATACTCAggttacctga ... tgagaatgcaGGTGCATTTTGAAACAACAGGTCCTGAGATATGGGAGGATACAAATGGACA
EST: gi|151411297|gb|EV281108.1|EV281108
EST:     ACACCAAATGCCCACATGCTGCA-CAATTTTCGAACCCTGCCAATACTCA                         GGTGCATTTTGAAACAACAGGTCCTGAGATATGGGAGGATACAAATGGACA
genomic: ACACCAAATGCCCACATGCTGCAACAATTTTCAAACCCTGCCAATACTCAggttacctga ... tgagaatgcaGGTGCATTTTGAAACAACAGGTCCTGAGATATGGGAGGATACAAATGGACA
EST: gi|37995283|gb|CF806872.1|CF806872
EST:     ACACCAAATGCCCACATGCTGCAACAATTTTCAAACCCTGCCAATACTCA                         GGTGCATTTTGAAACAACAGGTCCTGAGATATGGGAGGATACAAATGGACA
genomic: ACACCAAATGCCCACATGCTGCAACAATTTTCAAACCCTGCCAATACTCAggttacctga ... tgagaatgcaGGTGCATTTTGAAACAACAGGTCCTGAGATATGGGAGGATACAAATGGACA
EST: gi|10846291|gb|BF069214.1|BF069214
EST:     ACACCAAATGCCCACATGCTGCAACAATTTTCAAACCCTGCCAATACTCA                         TGTGCATTTTGAAACAACAGGTTCTGAGATATGGGAAGATACANATGG
genomic: ACACCAAATGCCCACATGCTGCAACAATTTTCAAACCCTGCCAATACTCAggttacctga ... tgagaatgcaGGTGCATTTTGAAACAACAGGTCCTGAGATATGGGAGGATACAAATGG
EST: gi|21994851|gb|BQ786379.1|BQ786379
EST:     ACACCAAATGCCCTCTTTTTGCAACAATTTTCAAACCCTGCCAATACTCA                         GGTGCATTTTGAAACAACAGGTCCTGAGATATGGGAGGATACAAATGGACA
genomic: ACACCAAATGCCCACATGCTGCAACAATTTTCAAACCCTGCCAATACTCAggttacctga ... tgagaatgcaGGTGCATTTTGAAACAACAGGTCCTGAGATATGGGAGGATACAAATGGACA
EST: gi|17519084|gb|BM188126.1|BM188126
EST:     ACACCAAATGCTCACATGCTGCAACAATTTTCAAACCCTGCCAATACTCA                         GGTGCATTTTGAAACAACAGGTCCTGAGATATGGGAGGATACAAATGGACA
genomic: ACACCAAATGCCCACATGCTGCAACAATTTTCAAACCCTGCCAATACTCAggttacctga ... tgagaatgcaGGTGCATTTTGAAACAACAGGTCCTGAGATATGGGAGGATACAAATGGACA
EST: gi|37997634|gb|CF809223.1|CF809223
EST:     ACACCAAATGCCCACATGCTGCAACAATTTTCAAACCCTGCCAATACTCA                         GGTGCATTTTGAAACAACAGGTCCTGAGATATGGGAGGATACAAATGGACA
genomic: ACACCAAATGCCCACATGCTGCAACAATTTTCAAACCCTGCCAATACTCAggttacctga ... tgagaatgcaGGTGCATTTTGAAACAACAGGTCCTGAGATATGGGAGGATACAAATGGACA
EST: gi|10843246|gb|BF066554.1|BF066554
EST:     ACACCAAATGCCCACATGCTGCAACAATTTTCAAACCCTGCCAATACTCA                         GGTGCATTTTGAAACAACAGGTCCTGAGATATGGGAGGATACAAATGGACA
genomic: ACACCAAATGCCCACATGCTGCAACAATTTTCAAACCCTGCCAATACTCAggttacctga ... tgagaatgcaGGTGCATTTTGAAACAACAGGTCCTGAGATATGGGAGGATACAAATGGACA
EST: gi|33390493|gb|CA853688.1|CA853688
EST:     ACACCAAATGCTCACATGCTGCAACAATTTTCAAACCCTGCCAATACTCA                         GGTGCATTTTGAAACAACAGGTCCTGAGATATGGGAGGATACAAATGGACA
genomic: ACACCAAATGCCCACATGCTGCAACAATTTTCAAACCCTGCCAATACTCAggttacctga ... tgagaatgcaGGTGCATTTTGAAACAACAGGTCCTGAGATATGGGAGGATACAAATGGACA
EST: gi|193493143|gb|FK463463.1|FK463463
EST:     ACACCAAATGCCCACATGCTGCAACAATTTTCAAACCCTGCCAATACTCA                         GGTGCATTTTGAAACAACAGGTCCTGAGATATGGGAGGATACAAATGGACA
genomic: ACACCAAATGCCCACATGCTGCAACAATTTTCAAACCCTGCCAATACTCAggttacctga ... tgagaatgcaGGTGCATTTTGAAACAACAGGTCCTGAGATATGGGAGGATACAAATGGACA
EST: gi|19935078|gb|BQ080108.1|BQ080108
EST:     ACACCAAATGCCCACATGCTGCAACAATTTTCAAACCCTGCCAATACTCA                         GGTGCATTTTGAAACAACAGGTCCTGAGATATGGGAGGATACAAATGGACA
genomic: ACACCAAATGCCCACATGCTGCAACAATTTTCAAACCCTGCCAATACTCAggttacctga ... tgagaatgcaGGTGCATTTTGAAACAACAGGTCCTGAGATATGGGAGGATACAAATGGACA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccttggcttttacaatggtgcatttatttatatattgacttcaaatgagaatgcaGGTGCATTTTGAAACAACAGGTCCTGAGATATGGGAGGATACAAATGGACAAGTTGACATATTTGTTATGGGAATAGGTAGTGGAGGCACAGTCTCTGGG
                                tattgac  putative branch site (score: 2)
                     atttatttatatattg  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ggttacctgaacctaaattactattgctgtttcaaatcttttactaagaaataaaaatctgcagaactatgtttgtactattcttttgtgatgcttgattgtacttaagtttagtactagatatagttctgaaatccttggcttttacaatggtgcatttatttatatattgacttcaaatgagaatgcaGGTGCATTTTGAAACAACAGGTCCTGAGATATGGGAGGATACAAATGGACAAGTTGACATATTTGTTATGGGAATAGGTAGTGGAGGCACAGTCTCTGGG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGTGGA
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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGAGG