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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTTAGCAGTGAAGATGCAGTTAACATGGCTAGGGTGTTGGCATTGAAGGAAGGACTCATGgtaatcttcaaaagacaatgttgtaaacttaaacaatgaatgcatgagaaatttcaagcttcattaatttaaccatgattttcaccctaggattcacatatgattcattagtaactgacaaagactgttcataaattggtaatcaaattctgaatttacaattatttttctttctaatttttccag

Basic information

species Glycine max
transcript GLYMA18G46920.1
intron # 8
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37995517|gb|CF807106.1|CF807106
EST:     AAGATGCAGTTAACATGGCTAGGGTGTTGGCATTGAAGGAAGGACTCATG                         GTAGGGATATCATCTGGAGCTAACACAGTTGCAGCTCTCAGATTGGCTCAG
genomic: AAGATGCAGTTAACATGGCTAGGGTGTTGGCATTGAAGGAAGGACTCATGgtaatcttca ... atttttccagGTAGGGATATCATCTGGAGCTAACACAGTTGCAGCTCTCAGATTGGCTCAG
EST: gi|208049368|gb|GD845737.1|GD845737
EST:     AAGATGCAGTTAACATGGCTAGGGTGTTGGCATTGAAGGAAGGACTCATG                         GTAGGGATATCATCTGGAGCTAACACAGTTGCAGCT
genomic: AAGATGCAGTTAACATGGCTAGGGTGTTGGCATTGAAGGAAGGACTCATGgtaatcttca ... atttttccagGTAGGGATATCATCTGGAGCTAACACAGTTGCAGCT
EST: gi|16346580|gb|BI972175.1|BI972175
EST:     AAGATGCAGTTAACATGGCTAGGGTGTTGGCATTGAAGGAAGGACTCATG                         GTAGGGATATCA
genomic: AAGATGCAGTTAACATGGCTAGGGTGTTGGCATTGAAGGAAGGACTCATGgtaatcttca ... atttttccagGTAGGGATATCA
EST: gi|6719405|gb|AW307052.1|AW307052
EST:     GTTAACATGGCTAGGGTGTTGGCATTGAAGGAAGGACTCATG                         GTAGGGATATCATCTGGAGCTAACACAGTTGCAGCTCTCAGATTGGCTCAG
genomic: GTTAACATGGCTAGGGTGTTGGCATTGAAGGAAGGACTCATGgtaatcttca ... atttttccagGTAGGGATATCATCTGGAGCTAACACAGTTGCAGCTCTCAGATTGGCTCAG
EST: gi|21994851|gb|BQ786379.1|BQ786379
EST:     AAGATGCAGTTAACATGGCTAGGGTGTTGGCATTGAAGGAAGGACTCATG                         GTAGGGATATCATCTGGAGCTAACACAGTTGCAGCTCTC
genomic: AAGATGCAGTTAACATGGCTAGGGTGTTGGCATTGAAGGAAGGACTCATGgtaatcttca ... atttttccagGTAGGGATATCATCTGGAGCTAACACAGTTGCAGCTCTC
EST: gi|37997634|gb|CF809223.1|CF809223
EST:     AAGATGCAGTTAACATGGCTAGGGTGTTGGCATTGAAGGAAGGACTCATG                         GTAGGGATATCATC
genomic: AAGATGCAGTTAACATGGCTAGGGTGTTGGCATTGAAGGAAGGACTCATGgtaatcttca ... atttttccagGTAGGGATATCATC
EST: gi|13482359|gb|BG511702.1|BG511702
EST:     AAGATGCAGTTAACATGGCTAGGGTGTTGGCATTGAAGGAAGGACTCATG                         GTAGGGATATCATCTGGAGCTAACACAGTTGCAGCTCTCAGATTGGCTCAG
genomic: AAGATGCAGTTAACATGGCTAGGGTGTTGGCATTGAAGGAAGGACTCATGgtaatcttca ... atttttccagGTAGGGATATCATCTGGAGCTAACACAGTTGCAGCTCTCAGATTGGCTCAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GGTTAGCAGTGAAGATGCAGTTAACATGGCTAGGGTGTTGGCATTGAAGGAAGGACTCATGgtaatcttcaaaagacaatgttgtaaacttaaacaatgaatgcatgagaaatttcaagcttcattaatttaaccatgattttcaccctaggattcacatatgattcattagtaactgacaaagactgttcataaattggtaatcaaattctgaatttacaattatttttctttctaatttttccag

- - - - -  AAGATG
- - - - - - - - - - - - - - - - - - - - -  TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - AAGGAA