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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGACTCCACTTGTTTATCTTAACAAAGTCACTGAAGGATGTGGAGCTTATGTTGCTGTCAAGCAAGAGATGATGCAACCTACTGCCAGCATCAAAGACAggtcaattcctccctatttccattcctatatgattttctttttgttcctacttttgaatttgattaagcttcatactattcttaatggtaatcaaaattcaaattaacacagaagaaaatttcttttgattttaca

Basic information

species Glycine max
transcript GLYMA18G46920.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|5509165|gb|AI855723.1|AI855723
EST:     TGTTGCTGTCAAGCAAGAGATGATGCAACCTACTGCCAGCATCAAAGACA                         GACCAGCATATGCAATGATCACAGATGCTGAGGAAAAGAATCTGATAACTC
genomic: TGTTGCTGTCAAGCAAGAGATGATGCAACCTACTGCCAGCATCAAAGACAggtcaattcc ... tgattttacaGACCAGCATATGCAATGATCACAGATGCTGAGGAAAAGAATCTGATAACTC
EST: gi|19934980|gb|BQ080010.1|BQ080010
EST:     TGTTGCTGTCAAGCAAGAGATGATGCAACCTACTGCCAGCATCAAAGACA                         GACCAGCATATGCAATGATCACAGATGCTGAGGAAAAGAATCTGATAACTC
genomic: TGTTGCTGTCAAGCAAGAGATGATGCAACCTACTGCCAGCATCAAAGACAggtcaattcc ... tgattttacaGACCAGCATATGCAATGATCACAGATGCTGAGGAAAAGAATCTGATAACTC
EST: gi|5666579|gb|AI930615.1|AI930615
EST:     TGTTGCTGTCAAGCAAGAGATGATGCAACCTACTGCCAGCATCAAAGACA                         GACCAGCATATGCAATGATCACAGATGCTGAGGAAAAGAATCTGATAACTC
genomic: TGTTGCTGTCAAGCAAGAGATGATGCAACCTACTGCCAGCATCAAAGACAggtcaattcc ... tgattttacaGACCAGCATATGCAATGATCACAGATGCTGAGGAAAAGAATCTGATAACTC
EST: gi|23057365|gb|BU578039.1|BU578039
EST:     TGTTGCTGTCAAGCAAGAGATGATGCAACCTACTGCCAGCATCAAAGACA                         GACCAGCATATGCAATGATCACAGATGCTGAGGAAAAGAATCTGATAACTC
genomic: TGTTGCTGTCAAGCAAGAGATGATGCAACCTACTGCCAGCATCAAAGACAggtcaattcc ... tgattttacaGACCAGCATATGCAATGATCACAGATGCTGAGGAAAAGAATCTGATAACTC
EST: gi|24135413|gb|BU925923.1|BU925923
EST:     TGTTGCTGTCAAGCAAGAGATGATGCAACCTACTGCCAGCATCAAAGACA                         GACCAGCATATGCAATGATCACAGATGCTGAGGAAAAGAATCTGATAACTC
genomic: TGTTGCTGTCAAGCAAGAGATGATGCAACCTACTGCCAGCATCAAAGACAggtcaattcc ... tgattttacaGACCAGCATATGCAATGATCACAGATGCTGAGGAAAAGAATCTGATAACTC
EST: gi|193376674|gb|FK340869.1|FK340869
EST:     TGTTGCTGTCAAGCAAGAGATGATGCAACCTACTGCCAGCATCAAAGACA                         GACCAGCATGTGCAATGATCACAGATGCTGAGGAAAAGAATCTGATAACTC
genomic: TGTTGCTGTCAAGCAAGAGATGATGCAACCTACTGCCAGCATCAAAGACAggtcaattcc ... tgattttacaGACCAGCATATGCAATGATCACAGATGCTGAGGAAAAGAATCTGATAACTC
EST: gi|151411297|gb|EV281108.1|EV281108
EST:     TGTTGCTGTCAAGCAAGAGATGATGCAACCTACTGCCAGCATCAAAGACA                         GACCAGCATATGCAATGATCACAGATGCTGAGGAAAAGAATCTGATAACTC
genomic: TGTTGCTGTCAAGCAAGAGATGATGCAACCTACTGCCAGCATCAAAGACAggtcaattcc ... tgattttacaGACCAGCATATGCAATGATCACAGATGCTGAGGAAAAGAATCTGATAACTC
EST: gi|16347438|gb|BI973033.1|BI973033
EST:     TGTTGCTGTCAAGCAAGAGATGATGCAACCTACTGCCAGCATCAAAGACA                         GACCAGCATATGCAATGATCACAGATGCTGAGGAAAAGAATCTGATAACTC
genomic: TGTTGCTGTCAAGCAAGAGATGATGCAACCTACTGCCAGCATCAAAGACAggtcaattcc ... tgattttacaGACCAGCATATGCAATGATCACAGATGCTGAGGAAAAGAATCTGATAACTC
EST: gi|37995283|gb|CF806872.1|CF806872
EST:     TGTTGCTGTCAAGCAAGAGATGATGCAACCTACTGCCAGCATCAAAGACA                         GACCAGCATATGCAATGATCACAGATGCTGAGGAAAAGAATCTGATAACTC
genomic: TGTTGCTGTCAAGCAAGAGATGATGCAACCTACTGCCAGCATCAAAGACAggtcaattcc ... tgattttacaGACCAGCATATGCAATGATCACAGATGCTGAGGAAAAGAATCTGATAACTC
EST: gi|193433978|gb|FK400130.1|FK400130
EST:     TGTTGCTGTCAAGCAAGAGATGATGCAACCTACTGCCAGCNTCAAAGACA                         GACCAGCATATGCAATGATCACAGATGCTGAGGAAAAGAATCTGATAACTC
genomic: TGTTGCTGTCAAGCAAGAGATGATGCAACCTACTGCCAGCATCAAAGACAggtcaattcc ... tgattttacaGACCAGCATATGCAATGATCACAGATGCTGAGGAAAAGAATCTGATAACTC
EST: gi|10846291|gb|BF069214.1|BF069214
EST:     TGTTGCTGTCAAGCAAGAGATGATGCAACCTACTGCCAGCATCAAAGACA                         GACCAGCATATGCAATGATCACAGATGCTGAGGAAAAGAATCTGATAACTC
genomic: TGTTGCTGTCAAGCAAGAGATGATGCAACCTACTGCCAGCATCAAAGACAggtcaattcc ... tgattttacaGACCAGCATATGCAATGATCACAGATGCTGAGGAAAAGAATCTGATAACTC
EST: gi|24136878|gb|BU927388.1|BU927388
EST:     TGTTGCTGTCAAGCAAGAGATGATGCAACCTACTGCCAGCATCAAAGACA                         GACCAGCATATGCAATGATCACAGATGCTGAGGAAAAGAATCTGATAACTC
genomic: TGTTGCTGTCAAGCAAGAGATGATGCAACCTACTGCCAGCATCAAAGACAggtcaattcc ... tgattttacaGACCAGCATATGCAATGATCACAGATGCTGAGGAAAAGAATCTGATAACTC
EST: gi|19934921|gb|BQ079951.1|BQ079951
EST:     TGTTGCTGTCAAGCAAGAGATGATGCAACCTACTGCCAGCATCAAAGACA                         GACCAGCATATGCAATGATCACAGATGCTGAGGAAAAGAATCTGATAACTC
genomic: TGTTGCTGTCAAGCAAGAGATGATGCAACCTACTGCCAGCATCAAAGACAggtcaattcc ... tgattttacaGACCAGCATATGCAATGATCACAGATGCTGAGGAAAAGAATCTGATAACTC
EST: gi|8283295|gb|BE020856.1|BE020856
EST:     TGTTGCTGTCAAGCAAGAGATGATGCAACCTACTGCCAGCATCAAAGACA                         GACCAGCATATGCAATGATCACAGATGCTGAGGAAAAGAATCTGATAACTC
genomic: TGTTGCTGTCAAGCAAGAGATGATGCAACCTACTGCCAGCATCAAAGACAggtcaattcc ... tgattttacaGACCAGCATATGCAATGATCACAGATGCTGAGGAAAAGAATCTGATAACTC
EST: gi|193358504|gb|FK326600.1|FK326600
EST:     TGTTGCTGTCAAGCAAGAGATGATGCAACCTACTGCCAGCATCAAAGACA                         GACCAGCATATGCAATGATCACAGATGCTGAGGAAAAGAATCTGATAACTC
genomic: TGTTGCTGTCAAGCAAGAGATGATGCAACCTACTGCCAGCATCAAAGACAggtcaattcc ... tgattttacaGACCAGCATATGCAATGATCACAGATGCTGAGGAAAAGAATCTGATAACTC
EST: gi|208329761|gb|GE130586.1|GE130586
EST:     TGTTGCTGTCAAGCAAGAGATGATGCAACCTACTGCCAGCATCAAAGACA                         GACCAGCATATGCAATGATCACAGATGCTGAGGAAAAGAATCTGATAACTC
genomic: TGTTGCTGTCAAGCAAGAGATGATGCAACCTACTGCCAGCATCAAAGACAggtcaattcc ... tgattttacaGACCAGCATATGCAATGATCACAGATGCTGAGGAAAAGAATCTGATAACTC
EST: gi|33390493|gb|CA853688.1|CA853688
EST:     TGTTGCTGTCAAGCAAGAGATGATGCAACCTACTGCCAGCATCAAAGACA                         GACCAGCATATGCAATGATCACAGATGCTGAGGAAAAGAATCTGATAACTC
genomic: TGTTGCTGTCAAGCAAGAGATGATGCAACCTACTGCCAGCATCAAAGACAggtcaattcc ... tgattttacaGACCAGCATATGCAATGATCACAGATGCTGAGGAAAAGAATCTGATAACTC
EST: gi|192296965|gb|FG990281.1|FG990281
EST:     TTTTGCTGTCAAGCAAGAGATGATGCAACCTACTGCCAGCATCAAAGACA                         GACCAGCATATGCAATGATCACAGATGCTGAGGAAAAGAATCTGATAACTC
genomic: TGTTGCTGTCAAGCAAGAGATGATGCAACCTACTGCCAGCATCAAAGACAggtcaattcc ... tgattttacaGACCAGCATATGCAATGATCACAGATGCTGAGGAAAAGAATCTGATAACTC
EST: gi|17021920|gb|BM092954.1|BM092954
EST:     TGTTGCTGTCAAGCAAGAGATGATGCAACCTACTGCCAGCATCAAAGACA                         GACCAGCATATGCAATGATCACAGATGCTGAGGAAAAGAATCTGATAACTC
genomic: TGTTGCTGTCAAGCAAGAGATGATGCAACCTACTGCCAGCATCAAAGACAggtcaattcc ... tgattttacaGACCAGCATATGCAATGATCACAGATGCTGAGGAAAAGAATCTGATAACTC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AGGACTCCACTTGTTTATCTTAACAAAGTCACTGAAGGATGTGGAGCTTATGTTGCTGTCAAGCAAGAGATGATGCAACCTACTGCCAGCATCAAAGACAggtcaattcctccctatttccattcctatatgattttctttttgttcctacttttgaatttgattaagcttcatactattcttaatggtaatcaaaattcaaattaacacagaagaaaatttcttttgattttaca

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG