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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TATTTGACACAAAGCACAATGGGATACTAGGTTTTGAAGAGTTTGCTCGTGCTCTCTCCGTTTTTCATCCAAATGCCCCTATTGATGATAAGATCGAATGtatgttgcacaaatttttttccctacaattattatttttgcatgaatttttctatattctatttttaaatttaagaacaatgcacaactggaatcaagtctttaattttctttaataacatttttaaataaaccaaaattgactccatatgatatcatgtttcagt

Basic information

species Glycine max
transcript GLYMA18G08230.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G08230.1 (Glycine max), 5'ss of exon 6
lower sequence: LOC_Os12g40510.1 (Oryza sativa), 5'ss of exon 5
-TATTTGACACAAAGCACAATGGGATACTAGGTTTTGAAGAGTTTGCTCGTGCTCTCTCCGTTTTTCATCCAAATGCCCCTATTGATGATAAGATCGAATGtatgttgcacaaatttttttccctacaattattatttttgcatgaatttttctatattctatttttaaatttaagaacaatgcacaactggaatcaagtctttaattttctttaataacatttttaaataaaccaaaattgactccatatgatatcatgtttcagt
 | ||||||||||| |||||||| ||  |||| ||||| || ||||||||||| ||||| || |||||||||| ||| ||  ||||||| ||||| || |||  |||   || |  |      ||  |  ||    |||| |      |  |||||     | || ||||||        ||| |       ||| | | |||  |  || |||   ||  |                                             
TTGTTTGACACAAAACACAATGGAATTTTAGGATTTGATGAATTTGCTCGTGCACTCTCAGTATTTCATCCAAGTGCTCCACTTGATGAGAAGATTGACTgtgagtt---cagacgta-----ctgtagctagatattttactc---ctcatctatgc---agttctaaatt--------atgtattgtcacaataatggcttggagcttatttgcaaaagt---------------------------------------------

upper sequence: GLYMA18G08230.1 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G007555_T01 (Zea mays), 5'ss of exon 5
-TATTTGACACAAAGCACAATGGGATACTAGGTTTTGAAGAGTTTGCTCGTGCTCTCTCCGTTTTTCATCCAAATGCCCCTATTGATGATAAGATCGAATGtatgttgcacaaatttttttccctacaattattatttttgcatgaatttttctatattctatttttaaatttaagaacaat--gcacaactggaatcaagtctttaattttctttaataacatttttaaataaaccaaaattgactccatatgatatcatgtttcagt
 | |||||||||||||||||||| ||  |||| |||||||| ||||||||||||||||| || |||||||| ||||| ||  ||||||| || || || |||  | | | |   |||| |        |||  || ||| || |  |  | |  || ||  || |      |     |  ||  ||  ||    | |     | |||                                                              
TTGTTTGACACAAAGCACAATGGAATTTTAGGATTTGAAGAATTTGCTCGTGCTCTCTCAGTATTTCATCCTAATGCTCCCCTTGATGAGAAAATTGACTgtgagct-ctcgtgttttgta------gattggtactttggctttcaactataaatgttaaatctaagttctctgacatgattagcctaataacagtaggagcctta--------------------------------------------------------------

upper sequence: GLYMA18G08230.1 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G173424_T02 (Zea mays), 5'ss of exon 5
-TATTTGACACAAAGCACAATGGGATACTAGGTTTTGAAGAGTTTGCTCGTGCTCTCTCCGTTTTTCATCCAAATGCCCCTATTGATGATAAGATCGAATGtatgttgcacaaatttttttccctacaattattatttttgcatgaatttttctatattctatttttaaatttaagaacaatgcacaactggaatcaagtctttaattttctttaataacatttttaaataaaccaaaattgactccatatgatatcatgtttcagt
 |||||||||||||||||| ||| ||  | || |||||||| ||||||||||||||||| || |||||||| ||||| ||  ||||||| || || || |||  | | | |   |||| ||   || | | || ||||     | || |   ||| ||  ||  | ||| ||     | | | ||  | |  |  |    ||| |||  |                                                         
TTATTTGACACAAAGCACAGTGGAATTTTGGGATTTGAAGAATTTGCTCGTGCTCTCTCAGTATTTCATCCTAATGCTCCCCTTGATGAGAAAATTGATTgtgagctcc-cgtgttttgttttgtagattgataatttggctctcaact---ctaaatgttaaatctaagtt-----atattacatcattacatgcttagctt-aatggt---------------------------------------------------------

upper sequence: GLYMA18G08230.1 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G112672_T02 (Zea mays), 5'ss of exon 4
-TATTTGACACAAAGCACAATGGGATACTAGGTTTTGAAGAGTTTGCTCGTGCTCTCTCCGTTTTTCATCCAAATGCCCCTATTGATGATAAGATCGAATGtatgttgcacaaatttttttccctacaattattatttttgcatgaatttttctatattctatttttaaatttaagaacaatgcacaactggaatcaagtctttaattttctttaataacatttttaaataaaccaaaattgactccatatgatatcatgtttcagt
 ||||||| ||||| ||||||||||| || || |||||||| |||||||| || ||||| || |||||||| ||||| ||  | ||||| |||||||| |||| |||     |   ||    | |      | | | ||||        || | | ||      | || ||    | | | |       ||   |||||   | |||  |                                                         
TTATTTGATACAAAACACAATGGGATTCTTGGATTTGAAGAATTTGCTCGGGCGCTCTCAGTATTTCATCCCAATGCTCCCTTGGATGAGAAGATCGAGTgtaagtt-tgtgatacttagggcatgtgcacagtttgtttga-------ttccaaaataaggcatgtacataacggcagattatgttgatgtggtcaaga--tgaatagt---------------------------------------------------------

upper sequence: GLYMA18G08230.1 (Glycine max), 5'ss of exon 6
lower sequence: AT5G55990.1 (Arabidopsis thaliana), 5'ss of exon 6
-TATTTGACACAAAGCACAATGGGATACTAGGTTTTGAAGAGTTTGCTCGTGCTCTCTCCGTTTTTCATCCAAATGCCCCTATTGATGATAAGATCGAATGtatgttgcacaaatttttttccctacaattattatttttgcatgaattt--ttctatattctatttttaaatttaagaacaatgcacaactggaatcaagtctttaattttctttaataacatttttaaataaaccaaaattgactccatatgatatcatgtttcagt
 | ||||| |||||||||||||| ||||| || ||||| || |||||||||||||||||||| ||||| |||||||| ||||| ||||| || ||  | |||| ||  |    |  || |  |  | ||  |  |||     |  |  ||  |  ||||| ||||||||   ||  ||                                                                                           
TTGTTTGATACAAAGCACAATGGAATACTGGGGTTTGAGGAATTTGCTCGTGCTCTCTCCGTCTTTCACCCAAATGCGCCTATAGATGACAAAATTCACTgtacgtcccttttagcttgtatctcaaaaacaagattgggataacacattaatgatatatactattttt---ttgcag-------------------------------------------------------------------------------------------

upper sequence: GLYMA18G08230.1 (Glycine max), 5'ss of exon 6
lower sequence: AT4G26570.2 (Arabidopsis thaliana), 5'ss of exon 6
-TATTTGACACAAAGCACAATGGGATACTAGGTTTTGAAGAGTTTGCTCGTGCTCTCTCCGTTTTTCATCCAAATGCCCCTATTGATGATAAGATCGAATGtatgttgcacaaatttttttccctacaattattatttttgcatgaatttttctatattctatttttaaatttaaga-acaatgcacaactggaatcaagtctttaattttctttaataacatttttaaataaaccaaaattgactccatatgatatcatgtttcagt
 | |||||||||||||| ||||| ||||| || ||||| |||||||| ||||||||||| || |||||||||||||| || || || || ||||| || |||| ||          |||   | |||||   | || |      |||    ||||||   | | | | |  || | |  | |     |||       |  ||  |||   |       |||||| ||    |                                    
TTGTTTGACACAAAGCATAATGGAATACTGGGGTTTGAGGAGTTTGCGCGTGCTCTCTCTGTCTTTCATCCAAATGCTCCCATAGAAGACAAGATTGACTgtacgtc---------tttgatcttacaaagttgatct----gagaaaccatctatacaatttatctgatgttgacatgctacatgtaacccatgaaatatcactaacagttaccgggaacattgttttgcag-----------------------------------

upper sequence: GLYMA18G08230.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv19s0015g01070.t01 (Vitis vinifera), 5'ss of exon 4
-TATTTGACACAAAGCACAATGGGATACTAGGTTTTGAAGAGTTTGCTCGTGCTCTCTCCGTTTTTCATCCAAATGCCCCTATTGATGATAAGATCGAATGtatgttgcacaaatttttttccctacaattattatttttgcatgaatttttctatattctatttttaaatttaagaacaatgcacaactggaatcaagtctttaattttctttaataacatttttaaataaaccaaaattgactccatatgatatcatgtttcagt
 | |||||||||||||| || || ||||| || ||||| ||||||||||||||||| || |||||||| || || || ||||| || || ||||| || ||||||||     || |  ||        ||||   | |   ||| |  | |||| | | |   ||| ||   |        | ||    |   || |  |    ||                                                             
TTGTTTGACACAAAGCATAACGGAATACTTGGCTTTGAGGAGTTTGCTCGTGCTCTATCTGTTTTTCACCCCAACGCACCTATCGACGACAAGATTGAGTgtatgttctttcaaatgctt-------gattaaattatccacataatgtgttctttgtacctctttcaacagtggttgtggttcatt-ttaacataatatgaacaaac-----------------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151397479|gb|EV267352.1|EV267352
EST:     GCTCTCTCCGTTTTTCATCCAAATGCCCCTATTGATGATAAGATCGAATT                         TTCCTTTCAACTATATGATCTCAAGCAGCAGGGTTTTATTGAAAGACAAGA
genomic: GCTCTCTCCGTTTTTCATCCAAATGCCCCTATTGATGATAAGATCGAATGtatgttgcac ... atgtttcagtTTCCTTTCAACTATATGATCTCAAGCAGCAGGGTTTTATTGAAAGACAAGA
EST: gi|192298955|gb|FG987700.1|FG987700
EST:     GCTCTCTCCGTTTTTCATCCAAATGCCCCTATTGATGATAAGATCGAATT                         TTCCTTTCAACTATATGATCTCAA
genomic: GCTCTCTCCGTTTTTCATCCAAATGCCCCTATTGATGATAAGATCGAATGtatgttgcac ... atgtttcagtTTCCTTTCAACTATATGATCTCAA
EST: gi|8284959|gb|BE022518.1|BE022518
EST:     GCTCTCTCCGTTTGTCATCCAAATGCCCCTATTGATGATAAGATCGAATT                         TTCCTTTCAACTATATGATCTCAAGCAGCAGGGTTNTATTGAAAGACAAGA
genomic: GCTCTCTCCGTTTTTCATCCAAATGCCCCTATTGATGATAAGATCGAATGtatgttgcac ... atgtttcagtTTCCTTTCAACTATATGATCTCAAGCAGCAGGGTTTTATTGAAAGACAAGA
EST: gi|13791269|gb|BG653860.1|BG653860
EST:     GCTCTCTCCGTTTTTCATCCAAATGCCCCTATTGATGATAAGATCGAATT                         TTCCTTTCAACTATATGATCTCAAGCAGCAGGGTTTTATTGAAAGACAAGA
genomic: GCTCTCTCCGTTTTTCATCCAAATGCCCCTATTGATGATAAGATCGAATGtatgttgcac ... atgtttcagtTTCCTTTCAACTATATGATCTCAAGCAGCAGGGTTTTATTGAAAGACAAGA
EST: gi|192334402|gb|FK025551.1|FK025551
EST:     GCTCTCTCCGTTTTTCATCCAAATGCCCCTACTGATGATAAGATCGAATT                         TTCCTTTCAACTATATGATCTCAAGCAGCAGG-TTTTATTGAAAGACAAGA
genomic: GCTCTCTCCGTTTTTCATCCAAATGCCCCTATTGATGATAAGATCGAATGtatgttgcac ... atgtttcagtTTCCTTTCAACTATATGATCTCAAGCAGCAGGGTTTTATTGAAAGACAAGA
EST: gi|209718662|gb|BW674764.1|BW674764
EST:     GCTCTCTCCGTTTTTCATCCAAATGCCCCTATTGATGATAAGATCGAATT                         TTCCTTTTCA-CTATATGATCTCAAGCAGCA
genomic: GCTCTCTCCGTTTTTCATCCAAATGCCCCTATTGATGATAAGATCGAATGtatgttgcac ... atgtttcagtTTCCTTT-CAACTATATGATCTCAAGCAGCA
EST: gi|254347752|gb|GR854001.1|GR854001
EST:     GCTCTCTCCGTTTTTCATCCAA-TGCCCCTATTGATGATA-GATCGAAT-                         TTCCTTTCAACTATATGATCCTCAAGCAGCAGGGTTTTATTG
genomic: GCTCTCTCCGTTTTTCATCCAAATGCCCCTATTGATGATAAGATCGAATGtatgttgcac ... atgtttcagtTTCCTTTCAACTATATGATC-TCAAGCAGCAGGGTTTTATTG
EST: gi|192320225|gb|FK014239.1|FK014239
EST:     GCTCTCTCCGTTTTTCATCCAAATGCCCCTATTGATGATAAGATCGAATT                         TTCCTTTCAACTATATGATCTCAAGCAGCAGGGTTTTATTGAAAGACAAGA
genomic: GCTCTCTCCGTTTTTCATCCAAATGCCCCTATTGATGATAAGATCGAATGtatgttgcac ... atgtttcagtTTCCTTTCAACTATATGATCTCAAGCAGCAGGGTTTTATTGAAAGACAAGA
EST: gi|254324275|gb|GR840592.1|GR840592
EST:     GCTCTCTCCGTTTTTCATCCAAATGCCCCTATTGATGATAAGATCGAATT                         TTCCTTTCAACTATATGATCTCAAGCAGCAGGGTTTTATTGAAAGACAAGA
genomic: GCTCTCTCCGTTTTTCATCCAAATGCCCCTATTGATGATAAGATCGAATGtatgttgcac ... atgtttcagtTTCCTTTCAACTATATGATCTCAAGCAGCAGGGTTTTATTGAAAGACAAGA
EST: gi|308098080|gb|HO761251.1|HO761251
EST:     GCTCTCTCCGTTTTTCATCCAAATGCCCCTATTGATGATAAGATCGAATT                         TTCCTTTCAACTATATGATCTCAAGCAGCAGGGTTTTATTGAAAGACAAGA
genomic: GCTCTCTCCGTTTTTCATCCAAATGCCCCTATTGATGATAAGATCGAATGtatgttgcac ... atgtttcagtTTCCTTTCAACTATATGATCTCAAGCAGCAGGGTTTTATTGAAAGACAAGA