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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tcaatttgagtaccttctaatatcagaatgtcatggatattatgtttcaattctgaagccaggtttctttctcccattgttgcctttcaaattttgcagaTTTTGGTATTTGGGATTGATCACCTGGAGTTGGAAATGGTTAAAAGG

Basic information

species Glycine max
transcript GLYMA18G08230.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151397479|gb|EV267352.1|EV267352
EST:     ACTCCTTCTTTTCCCTCTTCTGTTGCCCGATCTTCTGCCTCCAAGA                         TTTTGGTATTTGGGATTGATCACCTGGAGTTGGAAATGGTTAAAAGT
genomic: ACTCCTTCTTTTCCCTCTTCTGTTGCCCGATCTTCTGCCTCCAAGGtttgattttc ... attttgcagaTTTTGGTATTTGGGATTGATCACCTGGAGTTGGAAATGGTTAAAAGG
EST: gi|38192551|gb|CF921757.1|CF921757
EST:     TCACACTCCTTCTTTTCCCTCTTCTGTTGCCCGATCTTCTGCCTCCAAGA                         TTTTGGTATTTGGGATTGATCACCTGGAGTTGGAAATGGTTAAAAGT
genomic: TCACACTCCTTCTTTTCCCTCTTCTGTTGCCCGATCTTCTGCCTCCAAGGtttgattttc ... attttgcagaTTTTGGTATTTGGGATTGATCACCTGGAGTTGGAAATGGTTAAAAGG
EST: gi|38193812|gb|CF923018.1|CF923018
EST:     TCACACTCCTTCTTTTCCCTCTTCTGTTGCCCGATCTTCTGCCTCCAAGA                         TTTTGGTATTTGGGATTGATCACCTGGAGTTGGAAATGGTTAAAAGT
genomic: TCACACTCCTTCTTTTCCCTCTTCTGTTGCCCGATCTTCTGCCTCCAAGGtttgattttc ... attttgcagaTTTTGGTATTTGGGATTGATCACCTGGAGTTGGAAATGGTTAAAAGG
EST: gi|16349164|gb|BI974759.1|BI974759
EST:     TCACACTCCTTCTTTTCCCTCTTCTGTTGCCCGATCTTCTGCCTCCAAGA                         TTTTGGTATTTGGGATTGATCACCTGGAGTTGGAAATGGTTAAAAGT
genomic: TCACACTCCTTCTTTTCCCTCTTCTGTTGCCCGATCTTCTGCCTCCAAGGtttgattttc ... attttgcagaTTTTGGTATTTGGGATTGATCACCTGGAGTTGGAAATGGTTAAAAGG
EST: gi|192298955|gb|FG987700.1|FG987700
EST:     TCACACTCCTTCTTTTCCCTCTTCTGTTGCCCGATCTTCTGCCTCCAAGA                         TTTTGGTATTTGGGATTGATCACCTGGAGTTGGAAATGGTTAAAAGT
genomic: TCACACTCCTTCTTTTCCCTCTTCTGTTGCCCGATCTTCTGCCTCCAAGGtttgattttc ... attttgcagaTTTTGGTATTTGGGATTGATCACCTGGAGTTGGAAATGGTTAAAAGG
EST: gi|18848425|gb|BM567661.1|BM567661
EST:     TCACACTCCTTCTTTTCCCTCTTCTGTTGCCCGATCTTCTGCCTCCAAGA                         TTTTGGTATTTGGGATTGATCACCTGGAGTTGGAAATGGTTAAAAGT
genomic: TCACACTCCTTCTTTTCCCTCTTCTGTTGCCCGATCTTCTGCCTCCAAGGtttgattttc ... attttgcagaTTTTGGTATTTGGGATTGATCACCTGGAGTTGGAAATGGTTAAAAGG
EST: gi|8283189|gb|BE020750.1|BE020750
EST:     TCACACTCCTTCTTTTCCCTCTTCTGTTGCCCGATCTTCTGCCTCCAAGA                         TTTTGGTATTTGGGATTGATCACCTGGAGTTGGAAATGGTTAAAAGT
genomic: TCACACTCCTTCTTTTCCCTCTTCTGTTGCCCGATCTTCTGCCTCCAAGGtttgattttc ... attttgcagaTTTTGGTATTTGGGATTGATCACCTGGAGTTGGAAATGGTTAAAAGG
EST: gi|192334402|gb|FK025551.1|FK025551
EST:     TCACACTCCTTCTTTTCCCTCTTCTGTTGCCCGATCTTCTGCCTCCAAGA                         TTTTGGTATTTGGGATTGATCACCTGGAGTTGGAAATGGTTAAAAGT
genomic: TCACACTCCTTCTTTTCCCTCTTCTGTTGCCCGATCTTCTGCCTCCAAGGtttgattttc ... attttgcagaTTTTGGTATTTGGGATTGATCACCTGGAGTTGGAAATGGTTAAAAGG
EST: gi|209718662|gb|BW674764.1|BW674764
EST:     TCACACTCCTTCTTTTCCCTCTTCTGTTGCCCGATCTTCTGCCTCCAAGA                         TTTTGGTATTTGGGATTGATCACCTGGAGTTGGAAATGGTT--AAGT
genomic: TCACACTCCTTCTTTTCCCTCTTCTGTTGCCCGATCTTCTGCCTCCAAGGtttgattttc ... attttgcagaTTTTGGTATTTGGGATTGATCACCTGGAGTTGGAAATGGTTAAAAGG
EST: gi|254347752|gb|GR854001.1|GR854001
EST:     TCACACTCCTTCTTTTCCCTCTTCTGTTGCCCGATCTTCTGCCTCCAAGA                         TTTTGGTATTTGGGATTGATCACCTGGAGTTGGAAATGGTTAAAAGT
genomic: TCACACTCCTTCTTTTCCCTCTTCTGTTGCCCGATCTTCTGCCTCCAAGGtttgattttc ... attttgcagaTTTTGGTATTTGGGATTGATCACCTGGAGTTGGAAATGGTTAAAAGG
EST: gi|192320225|gb|FK014239.1|FK014239
EST:     TCACACTCCTTCTTTTCCCTCTTCTGTTGCCCGATCTTCTGCCTCCAAGA                         TTTTGGTATTTGGGATTGATCACCTGGAGTTGGAAATGGTTAAAAGT
genomic: TCACACTCCTTCTTTTCCCTCTTCTGTTGCCCGATCTTCTGCCTCCAAGGtttgattttc ... attttgcagaTTTTGGTATTTGGGATTGATCACCTGGAGTTGGAAATGGTTAAAAGG
EST: gi|213592918|gb|DB966023.1|DB966023
EST:     TCACACTCCTTCTTTTCCCTCTTCTGTTGCCCGATCTTCTGCCTCCAAGA                         TTTTGGTATTTGGGATTGATCACCTGGAGTTGGAAATGGTTAAAAGT
genomic: TCACACTCCTTCTTTTCCCTCTTCTGTTGCCCGATCTTCTGCCTCCAAGGtttgattttc ... attttgcagaTTTTGGTATTTGGGATTGATCACCTGGAGTTGGAAATGGTTAAAAGG
EST: gi|254324275|gb|GR840592.1|GR840592
EST:     TCACACTCCTTCTTTTCCCTCTTCTGTTGCCCGATCTTCTGCCTCCAAGA                         TTTTGGTATTTGGGATTGATCACCTGGAGTTGGAAATGGTTAAAAGT
genomic: TCACACTCCTTCTTTTCCCTCTTCTGTTGCCCGATCTTCTGCCTCCAAGGtttgattttc ... attttgcagaTTTTGGTATTTGGGATTGATCACCTGGAGTTGGAAATGGTTAAAAGG
EST: gi|308098080|gb|HO761251.1|HO761251
EST:     TCACACTCCTTCTTTTCCCTCTTCTGTTGCCCGATCTTCTGCCTCCAAGA                         TTTTGGTATTTGGGATTGATCACCTGGAGTTGGAAATGGTTAAAAGT
genomic: TCACACTCCTTCTTTTCCCTCTTCTGTTGCCCGATCTTCTGCCTCCAAGGtttgattttc ... attttgcagaTTTTGGTATTTGGGATTGATCACCTGGAGTTGGAAATGGTTAAAAGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttcaattctgaagccaggtttctttctcccattgttgcctttcaaattttgcagaTTTTGGTATTTGGGATTGATCACCTGGAGTTGGAAATGGTTAAAAGG
                                       tttcaaatttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
tcaatttgagtaccttctaatatcagaatgtcatggatattatgtttcaattctgaagccaggtttctttctcccattgttgcctttcaaattttgcagaTTTTGGTATTTGGGATTGATCACCTGGAGTTGGAAATGGTTAAAAGG

- - - - - - ccttcta
- - - - - - - - - - - - - - - -catggat
- - - - - - - - - - - - - - - - - - - - - - - - - - ctgaagc