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tatgttgcacaaatttttttccctacaattattatttttgcatgaatttttctatattctatttttaaatttaagaacaatgcacaactggaatcaagtctttaattttctttaataacatttttaaataaaccaaaattgactccatatgatatcatgtttcagtTTCCTTTCAACTATATGATCTCAAGCAGCAGGGTTTTATTGAAAGACAAGAGG
species | Glycine max |
transcript | GLYMA18G08230.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GCTCTCTCCGTTTTTCATCCAAATGCCCCTATTGATGATAAGATCGAATT TTCCTTTCAACTATATGATCTCAAGCAGCAGGGTTTTATTGAAAGACAAGAEST: gi|192298955|gb|FG987700.1|FG987700
genomic: GCTCTCTCCGTTTTTCATCCAAATGCCCCTATTGATGATAAGATCGAATGtatgttgcac ... atgtttcagtTTCCTTTCAACTATATGATCTCAAGCAGCAGGGTTTTATTGAAAGACAAGA
EST: GCTCTCTCCGTTTTTCATCCAAATGCCCCTATTGATGATAAGATCGAATT TTCCTTTCAACTATATGATCTCAAEST: gi|8284959|gb|BE022518.1|BE022518
genomic: GCTCTCTCCGTTTTTCATCCAAATGCCCCTATTGATGATAAGATCGAATGtatgttgcac ... atgtttcagtTTCCTTTCAACTATATGATCTCAA
EST: GCTCTCTCCGTTTGTCATCCAAATGCCCCTATTGATGATAAGATCGAATT TTCCTTTCAACTATATGATCTCAAGCAGCAGGGTTNTATTGAAAGACAAGAEST: gi|13791269|gb|BG653860.1|BG653860
genomic: GCTCTCTCCGTTTTTCATCCAAATGCCCCTATTGATGATAAGATCGAATGtatgttgcac ... atgtttcagtTTCCTTTCAACTATATGATCTCAAGCAGCAGGGTTTTATTGAAAGACAAGA
EST: GCTCTCTCCGTTTTTCATCCAAATGCCCCTATTGATGATAAGATCGAATT TTCCTTTCAACTATATGATCTCAAGCAGCAGGGTTTTATTGAAAGACAAGAEST: gi|192334402|gb|FK025551.1|FK025551
genomic: GCTCTCTCCGTTTTTCATCCAAATGCCCCTATTGATGATAAGATCGAATGtatgttgcac ... atgtttcagtTTCCTTTCAACTATATGATCTCAAGCAGCAGGGTTTTATTGAAAGACAAGA
EST: GCTCTCTCCGTTTTTCATCCAAATGCCCCTACTGATGATAAGATCGAATT TTCCTTTCAACTATATGATCTCAAGCAGCAGG-TTTTATTGAAAGACAAGAEST: gi|209718662|gb|BW674764.1|BW674764
genomic: GCTCTCTCCGTTTTTCATCCAAATGCCCCTATTGATGATAAGATCGAATGtatgttgcac ... atgtttcagtTTCCTTTCAACTATATGATCTCAAGCAGCAGGGTTTTATTGAAAGACAAGA
EST: GCTCTCTCCGTTTTTCATCCAAATGCCCCTATTGATGATAAGATCGAATT TTCCTTTTCA-CTATATGATCTCAAGCAGCAEST: gi|254347752|gb|GR854001.1|GR854001
genomic: GCTCTCTCCGTTTTTCATCCAAATGCCCCTATTGATGATAAGATCGAATGtatgttgcac ... atgtttcagtTTCCTTT-CAACTATATGATCTCAAGCAGCA
EST: GCTCTCTCCGTTTTTCATCCAA-TGCCCCTATTGATGATA-GATCGAAT- TTCCTTTCAACTATATGATCCTCAAGCAGCAGGGTTTTATTGEST: gi|192320225|gb|FK014239.1|FK014239
genomic: GCTCTCTCCGTTTTTCATCCAAATGCCCCTATTGATGATAAGATCGAATGtatgttgcac ... atgtttcagtTTCCTTTCAACTATATGATC-TCAAGCAGCAGGGTTTTATTG
EST: GCTCTCTCCGTTTTTCATCCAAATGCCCCTATTGATGATAAGATCGAATT TTCCTTTCAACTATATGATCTCAAGCAGCAGGGTTTTATTGAAAGACAAGAEST: gi|254324275|gb|GR840592.1|GR840592
genomic: GCTCTCTCCGTTTTTCATCCAAATGCCCCTATTGATGATAAGATCGAATGtatgttgcac ... atgtttcagtTTCCTTTCAACTATATGATCTCAAGCAGCAGGGTTTTATTGAAAGACAAGA
EST: GCTCTCTCCGTTTTTCATCCAAATGCCCCTATTGATGATAAGATCGAATT TTCCTTTCAACTATATGATCTCAAGCAGCAGGGTTTTATTGAAAGACAAGAEST: gi|308098080|gb|HO761251.1|HO761251
genomic: GCTCTCTCCGTTTTTCATCCAAATGCCCCTATTGATGATAAGATCGAATGtatgttgcac ... atgtttcagtTTCCTTTCAACTATATGATCTCAAGCAGCAGGGTTTTATTGAAAGACAAGA
EST: GCTCTCTCCGTTTTTCATCCAAATGCCCCTATTGATGATAAGATCGAATT TTCCTTTCAACTATATGATCTCAAGCAGCAGGGTTTTATTGAAAGACAAGA
genomic: GCTCTCTCCGTTTTTCATCCAAATGCCCCTATTGATGATAAGATCGAATGtatgttgcac ... atgtttcagtTTCCTTTCAACTATATGATCTCAAGCAGCAGGGTTTTATTGAAAGACAAGA
ttaataacatttttaaataaaccaaaattgactccatatgatatcatgtttcagtTTCCTTTCAACTATATGATCTCAAGCAGCAGGGTTTTATTGAAAGACAAGAGG
aacatttttaaataaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tatgttgcacaaatttttttccctacaattattatttttgcatgaatttttctatattctatttttaaatttaagaacaatgcacaactggaatcaagtctttaattttctttaataacatttttaaataaaccaaaattgactccatatgatatcatgtttcagtTTCCTTTCAACTATATGATCTCAAGCAGCAGGGTTTTATTGAAAGACAAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG