Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAGTGTAAGCGAAATAGAAGCACTTTACGAGCTCTTCAAAAAGATTAGCAGTGCTGTAATCGACGATGGGTTGATTAACAAGGtttgtcattggaaaactgtgttttgggcatattgtatttcactagttgagcctttttcaacaatgaaagaaaataaatatttcatttaagttttatttatttatagtgtagcttctatttttctattttgtcatttacttttcaaaatctatcagatgttacattcaattttagatttcatttgcagg

Basic information

species Glycine max
transcript GLYMA18G08230.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G08230.1 (Glycine max), 5'ss of exon 4
lower sequence: LOC_Os12g40510.1 (Oryza sativa), 5'ss of exon 3
-CAGTGTAAGCGAAATAGAAGCACTTTACGAGCTCTTCAAAAAGATTAGCAGTGCTGTAATCGACGATGGGTTGATTAACAAGGtttgtcattggaaaactgtgttttgggcat-attgtatttcact-agttgagcctttttcaacaatgaaagaaaataaatatttcatttaagttttatttatttatagtgtagcttctatttttctattttgtcatttacttttcaaaatctatcagatgttacattcaattttagatttcatttgcagg
 ||| || |||||  | || || || |||||||||||||| ||||| ||||||||||| || || || ||| |||||||||||||| ||   ||||   || ||||   | ||  ||| | | ||    | ||| |  |  || |    |  |   |   |   || | |||         |  |  | || || |    ||   | |   |||   | || || ||    |                                          
TCAGCGTGAGCGAGGTCGAGGCGCTGTACGAGCTCTTCAAGAAGATAAGCAGTGCTGTGATTGATGACGGGCTGATTAACAAGgttggtg--tggagtcctctgttcgcgccacgattttgtatcgtagaattgggattgattgattggttgattgatgaaggcatgttatt--------gtgaacctgta-tgcaatcactgactgt--gtttgtccgttgaccttgtgcag-----------------------------------------

upper sequence: GLYMA18G08230.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G007555_T01 (Zea mays), 5'ss of exon 3
-CAGTGTAAGCGAAATAGAAGCACTTTACGAGCTCTTCAAAAAGATTAGCAGTGCTGTAATCGACGATGGGTTGATTAACAAGGtttgtcattggaaaactgtgttttgggcatattgtatttcactagttgagcctttttcaacaatgaaagaaaataaatatttcatttaagttttatttatttatagtgtagcttctatttttctattttgtcatttacttttcaaaatctatcagatgttacattcaattttagatttcatttgcagg
 ||| || |||||  | || || || |||||||| ||||| ||||| ||||||||||| ||||| |||||| |||||||||||||  || || ||  |         | ||   | ||| |    ||  |  |  || ||       || | |  | |    ||||    |  ||  |  | | |    | |     |    | ||||   ||||||  | |||| ||                                            
TCAGCGTGAGCGAGGTCGAGGCTCTGTACGAGCTGTTCAAGAAGATAAGCAGTGCTGTCATCGATGATGGGCTGATTAACAAGgtcagtgatgggtga---------ttggtccactgtttagttcttatgtaatctcttattgttgtgtatggta-tgtgcatttg---tgggtgatggtcaatgcctgagatatattagctgttcttgcttgtcacct-ctttgcag-------------------------------------------

upper sequence: GLYMA18G08230.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G112672_T02 (Zea mays), 5'ss of exon 2
-CAGTGTAAGCGAAATAGAAGCACTTTACGAGCTCTTCAAAAAGATTAGCAGTGCTGTAATCGACGATGGGTTGATTAACAAGGtttgtcattggaaaactgtgttttgggcatattgtatttcactagttgagcctttttcaacaatgaaagaaaataaatatttcatttaagttttatttatttatagtgtagcttctatttttctattttgtcatttacttttcaaaatctatcagatgttacattcaattttagatttcatttgcagg
  || || |||||  | || ||| | || || || ||||| ||||| ||||||||||| || || |||||| |||| ||||||||||||    ||   | ||           |  ||  ||||  |  ||    || ||          | |||||| ||||   | ||   | ||||| ||| || |   ||           |  |  |  || |      |    |||||    | |||  |  ||   |   |   ||   ||||| 
TTAGCGTGAGCGAGGTCGAGGCATTGTATGAACTGTTCAAGAAGATCAGCAGTGCTGTGATTGATGATGGGCTGATCAACAAGgtttgt----gggtgattgc----------tgctgc-tttctttcttttcttctctt----------aggaaaatgaatacaactttcttgctttatgtatgtacacaatacacatacaccatacacatgatcgtga----tgagtaatctg--ggttgtggcgctcttgtcctggcatc--ctgcag-

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151397479|gb|EV267352.1|EV267352
EST:     CTTCAAAAAGATTAGCAGTGCTGTAATCGACGATGGGTTGATTAACAAGG                         AAGAGTTTCAGTTGGCATCGTTCAAGACAAATAAAAAAGAAAGTCTGTTTG
genomic: CTTCAAAAAGATTAGCAGTGCTGTAATCGACGATGGGTTGATTAACAAGGtttgtcattg ... catttgcaggAAGAGTTTCAGTTGGCATTGTTCAAGACAAATAAAAAAGAAAGTCTGTTTG
EST: gi|38192551|gb|CF921757.1|CF921757
EST:     CTTCAAAAAGATTAGCAGTGCTGTAATCGACGATGGGTTGATTAACAAGG                         AAGAGTTTCAGTTGGCATTGTTCAAGAC
genomic: CTTCAAAAAGATTAGCAGTGCTGTAATCGACGATGGGTTGATTAACAAGGtttgtcattg ... catttgcaggAAGAGTTTCAGTTGGCATTGTTCAAGAC
EST: gi|16349164|gb|BI974759.1|BI974759
EST:     CTTCAAAAAGATTAGCAGTGCTGTAATCGACGATGGGTTGATTAACAAGG                         AAGAGTTTCAGTTGGCATTGTTCAAGACAAATAAAAAAGAAAGTCTGTTTG
genomic: CTTCAAAAAGATTAGCAGTGCTGTAATCGACGATGGGTTGATTAACAAGGtttgtcattg ... catttgcaggAAGAGTTTCAGTTGGCATTGTTCAAGACAAATAAAAAAGAAAGTCTGTTTG
EST: gi|192298955|gb|FG987700.1|FG987700
EST:     CTTCAAAAAGATTAGCAGTGCTGTAATCGACGATGGGTTGATTAACAAGG                         AAGAGTTTCAGTTGGCATTGTTCAAGACAAATAAAAAAGAAAGTCTGTTTG
genomic: CTTCAAAAAGATTAGCAGTGCTGTAATCGACGATGGGTTGATTAACAAGGtttgtcattg ... catttgcaggAAGAGTTTCAGTTGGCATTGTTCAAGACAAATAAAAAAGAAAGTCTGTTTG
EST: gi|18848425|gb|BM567661.1|BM567661
EST:     CTTCAAAAAGATTAGCAGTGCTGTAATCGACGATGGGTTGATTAACAAGG                         AAGAGTTTCAGTTGGCATTGTTCAAGACAAATAAAAAAGAAAGTCTGTTTG
genomic: CTTCAAAAAGATTAGCAGTGCTGTAATCGACGATGGGTTGATTAACAAGGtttgtcattg ... catttgcaggAAGAGTTTCAGTTGGCATTGTTCAAGACAAATAAAAAAGAAAGTCTGTTTG
EST: gi|8284959|gb|BE022518.1|BE022518
EST:     CTTCAAAAAGATTAGCAGTGCTGTAATCGACGATGGGTTGATTAACAAGG                         AAGAGTTTCAGTTGGCATTGTTCAAGACAAATAAAAAAGAAAGTCTGTTTG
genomic: CTTCAAAAAGATTAGCAGTGCTGTAATCGACGATGGGTTGATTAACAAGGtttgtcattg ... catttgcaggAAGAGTTTCAGTTGGCATTGTTCAAGACAAATAAAAAAGAAAGTCTGTTTG
EST: gi|13791269|gb|BG653860.1|BG653860
EST:     CTTCAAAAAGATTAGCAGTGCTGTAATCGACGATGGGTTGATTAACAAGG                         AAGAGTTTCAGTTGGCATTGTTCAAGACAAATAAAAAAGAAAGTCTGTTTG
genomic: CTTCAAAAAGATTAGCAGTGCTGTAATCGACGATGGGTTGATTAACAAGGtttgtcattg ... catttgcaggAAGAGTTTCAGTTGGCATTGTTCAAGACAAATAAAAAAGAAAGTCTGTTTG
EST: gi|8283189|gb|BE020750.1|BE020750
EST:     CTTCAAAAAGATTAGCAGTGCTGTAATCGACGATGGGTTGATTAACAAGG                         AAGAGTTTCAGTTGGCATTGTTCAAGACAAATAAAAAAGAAAGTCTGGTTG
genomic: CTTCAAAAAGATTAGCAGTGCTGTAATCGACGATGGGTTGATTAACAAGGtttgtcattg ... catttgcaggAAGAGTTTCAGTTGGCATTGTTCAAGACAAATAAAAAAGAAAGTCTGTTTG
EST: gi|192334402|gb|FK025551.1|FK025551
EST:     CTTCAAAAAGATTAGCAGTGCTGTAATCGACGATGGGTTGATTAACAAGG                         AAGAGTTTCAGTTGGCATTGTTCAAGACAAATAAAAAAGAAAGTCTGTTTG
genomic: CTTCAAAAAGATTAGCAGTGCTGTAATCGACGATGGGTTGATTAACAAGGtttgtcattg ... catttgcaggAAGAGTTTCAGTTGGCATTGTTCAAGACAAATAAAAAAGAAAGTCTGTTTG
EST: gi|209718662|gb|BW674764.1|BW674764
EST:     CTTCAAAAAGATTAGCAGTGCTGTAATCGACGATGGGTTGATTAACAAGG                         AAGAGTTTCAGTTGGCATTGTTCAAGACAAATAAAAAAGAAAGTCTGTTTG
genomic: CTTCAAAAAGATTAGCAGTGCTGTAATCGACGATGGGTTGATTAACAAGGtttgtcattg ... catttgcaggAAGAGTTTCAGTTGGCATTGTTCAAGACAAATAAAAAAGAAAGTCTGTTTG
EST: gi|254347752|gb|GR854001.1|GR854001
EST:     CTTCAAAAAGATTAGCAGTGCTGTAATCGACGATGGGTTGATTAACAAGG                         AAGAGTTTCAGTTGGCATTGTTCAAGACAAATAAAAAAGAAAGTCTGTTTG
genomic: CTTCAAAAAGATTAGCAGTGCTGTAATCGACGATGGGTTGATTAACAAGGtttgtcattg ... catttgcaggAAGAGTTTCAGTTGGCATTGTTCAAGACAAATAAAAAAGAAAGTCTGTTTG
EST: gi|192320225|gb|FK014239.1|FK014239
EST:     CTTCAAAAAGATTAGCAGTGCTGTAATCGACGATGGGTTGATTAACAAGG                         AAGAGTTTCAGTTGGCATTGTTCAAGACAAATAAAAAAGAAAGTCTGTTTG
genomic: CTTCAAAAAGATTAGCAGTGCTGTAATCGACGATGGGTTGATTAACAAGGtttgtcattg ... catttgcaggAAGAGTTTCAGTTGGCATTGTTCAAGACAAATAAAAAAGAAAGTCTGTTTG
EST: gi|213592918|gb|DB966023.1|DB966023
EST:     CTTCAAAAAGATTAGCAGTGCTGTAATCGACGATGGGTTGATTAACAAGG                         AAGAGTTTCAGTTGGCATTGTTCAAGACAAATAAAAAAGAAAGTCTGTTTG
genomic: CTTCAAAAAGATTAGCAGTGCTGTAATCGACGATGGGTTGATTAACAAGGtttgtcattg ... catttgcaggAAGAGTTTCAGTTGGCATTGTTCAAGACAAATAAAAAAGAAAGTCTGTTTG
EST: gi|254324275|gb|GR840592.1|GR840592
EST:     CTTCAAAAAGATTAGCAGTGCTGTAATCGACGATGGGTTGATTAACAAGG                         AAGAGTTTCAGTTGGCATTGTTCAAGACAAATAAAAAAGAAAGTCTGTTTG
genomic: CTTCAAAAAGATTAGCAGTGCTGTAATCGACGATGGGTTGATTAACAAGGtttgtcattg ... catttgcaggAAGAGTTTCAGTTGGCATTGTTCAAGACAAATAAAAAAGAAAGTCTGTTTG
EST: gi|308098080|gb|HO761251.1|HO761251
EST:     CTTCAAAAAGATTAGCAGTGCTGTAATCGACGATGGGTTGATTAACAAGG                         AAGAGTTTCAGTTGGCATTGTTCAAGACAAATAAAAAAGAAAGTCTGTTTA
genomic: CTTCAAAAAGATTAGCAGTGCTGTAATCGACGATGGGTTGATTAACAAGGtttgtcattg ... catttgcaggAAGAGTTTCAGTTGGCATTGTTCAAGACAAATAAAAAAGAAAGTCTGTTTG