1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...tgtttacgtattatttcaacattatattttgttcaaaaattgattcacaattcaacttgtgattggaatctaatatgaacttctctctaactctattaggTATTTGATTTATTTGACACAAAGCACAATGGGATACTAGGTTTTGAAGAGTTTGCTCGTGCTCTCTCCGTTTTTCATCCAAATGCCCCTATTGATGATAA
species | Glycine max |
transcript | GLYMA18G08230.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GTTGGCATCGTTCAAGACAAATAAAAAAGAAAGTCTGTTTGCTGATCGGG TATTTGATTTATTTGACACAAAGCACAATGGGATACTAGGTTTTGAAGAGTEST: gi|16349164|gb|BI974759.1|BI974759
genomic: GTTGGCATTGTTCAAGACAAATAAAAAAGAAAGTCTGTTTGCTGATCGGGtattgctttc ... ctctattaggTATTTGATTTATTTGACACAAAGCACAATGGGATACTAGGTTTTGAAGAGT
EST: GTTGGCATTGTTCAAGACAAATAAAAAAGAAAGTCTGTTTGCTGATCGGG TATTTGATTTATTTGACACAAAGCACAATGGGATACTAGGTTTTGAAGAGTEST: gi|192298955|gb|FG987700.1|FG987700
genomic: GTTGGCATTGTTCAAGACAAATAAAAAAGAAAGTCTGTTTGCTGATCGGGtattgctttc ... ctctattaggTATTTGATTTATTTGACACAAAGCACAATGGGATACTAGGTTTTGAAGAGT
EST: GTTGGCATTGTTCAAGACAAATAAAAAAGAAAGTCTGTTTGCTGATCGGG TATTTGATTTATTTGACACAAAGCACAATGGGATACTAGGTTTTGAAGAGTEST: gi|18848425|gb|BM567661.1|BM567661
genomic: GTTGGCATTGTTCAAGACAAATAAAAAAGAAAGTCTGTTTGCTGATCGGGtattgctttc ... ctctattaggTATTTGATTTATTTGACACAAAGCACAATGGGATACTAGGTTTTGAAGAGT
EST: GTTGGCATTGTTCAAGACAAATAAAAAAGAAAGTCTGTTTGCTGATCGGG TATTTGATTTATTTGACACAAAGCACAATGGGATACTAGGTTTTGAAGAGTEST: gi|8284959|gb|BE022518.1|BE022518
genomic: GTTGGCATTGTTCAAGACAAATAAAAAAGAAAGTCTGTTTGCTGATCGGGtattgctttc ... ctctattaggTATTTGATTTATTTGACACAAAGCACAATGGGATACTAGGTTTTGAAGAGT
EST: GTTGGCATTGTTCAAGACAAATAAAAAAGAAAGTCTGTTTGCTGATCGGG TATTTGATTTATTTGACACAAAGCACAATGGGATACTAGGTTTTGAAGAGTEST: gi|13791269|gb|BG653860.1|BG653860
genomic: GTTGGCATTGTTCAAGACAAATAAAAAAGAAAGTCTGTTTGCTGATCGGGtattgctttc ... ctctattaggTATTTGATTTATTTGACACAAAGCACAATGGGATACTAGGTTTTGAAGAGT
EST: GTTGGCATTGTTCAAGACAAATAAAAAAGAAAGTCTGTTTGCTGATCGGG TATTTGATTTATTTGACACAAAGCACAATGGGATACTAGGTTTTGAAGAGTEST: gi|8283189|gb|BE020750.1|BE020750
genomic: GTTGGCATTGTTCAAGACAAATAAAAAAGAAAGTCTGTTTGCTGATCGGGtattgctttc ... ctctattaggTATTTGATTTATTTGACACAAAGCACAATGGGATACTAGGTTTTGAAGAGT
EST: GTTGGCATTGTTCAAGACAAATAAAAAAGAAAGTCTGGTTGCTGATCGGG TATTTGATTTATTTGACACAAAGCACAATGGGATACTANGGTTTEST: gi|192334402|gb|FK025551.1|FK025551
genomic: GTTGGCATTGTTCAAGACAAATAAAAAAGAAAGTCTGTTTGCTGATCGGGtattgctttc ... ctctattaggTATTTGATTTATTTGACACAAAGCACAATGGGATACTA-GGTTT
EST: GTTGGCATTGTTCAAGACAAATAAAAAAGAAAGTCTGTTTGCTGATCGGG TATTTGATTTATTTGACACAAAGCACAATGGGATACTAGGTTTTGAAGAGTEST: gi|209718662|gb|BW674764.1|BW674764
genomic: GTTGGCATTGTTCAAGACAAATAAAAAAGAAAGTCTGTTTGCTGATCGGGtattgctttc ... ctctattaggTATTTGATTTATTTGACACAAAGCACAATGGGATACTAGGTTTTGAAGAGT
EST: GTTGGCATTGTTCAAGACAAATAAAAAAGAAAGTCTGTTTGCTGATCGGG TATTTGATTTATTTGACACAAAGCACAATGGGATACTAGGTTTTGAAGAGTEST: gi|254347752|gb|GR854001.1|GR854001
genomic: GTTGGCATTGTTCAAGACAAATAAAAAAGAAAGTCTGTTTGCTGATCGGGtattgctttc ... ctctattaggTATTTGATTTATTTGACACAAAGCACAATGGGATACTAGGTTTTGAAGAGT
EST: GTTGGCATTGTTCAAGACAAATAAAAAAGAAAGTCTGTTTGCTGATCGGG TATTTGATTTATTTGACACAAAGCACAATGGGATACTAGGTTTTGAAGAGTEST: gi|192320225|gb|FK014239.1|FK014239
genomic: GTTGGCATTGTTCAAGACAAATAAAAAAGAAAGTCTGTTTGCTGATCGGGtattgctttc ... ctctattaggTATTTGATTTATTTGACACAAAGCACAATGGGATACTAGGTTTTGAAGAGT
EST: GTTGGCATTGTTCAAGACAAATAAAAAAGAAAGTCTGTTTGCTGATCGGG TATTTGATTTATTTGACACAAAGCACAATGGGATACTAGGTTTTGAAGAGTEST: gi|213592918|gb|DB966023.1|DB966023
genomic: GTTGGCATTGTTCAAGACAAATAAAAAAGAAAGTCTGTTTGCTGATCGGGtattgctttc ... ctctattaggTATTTGATTTATTTGACACAAAGCACAATGGGATACTAGGTTTTGAAGAGT
EST: GTTGGCATTGTTCAAGACAAATAAAAAAGAAAGTCTGTTTGCTGATCGGG TATTTGATTTATTTGACACAAAGCACAATGGGATACTAGGTTTTGAAGAGTEST: gi|254324275|gb|GR840592.1|GR840592
genomic: GTTGGCATTGTTCAAGACAAATAAAAAAGAAAGTCTGTTTGCTGATCGGGtattgctttc ... ctctattaggTATTTGATTTATTTGACACAAAGCACAATGGGATACTAGGTTTTGAAGAGT
EST: GTTGGCATTGTTCAAGACAAATAAAAAAGAAAGTCTGTTTGCTGATCGGG TATTTGATTTATTTGACACAAAGCACAATGGGATACTAGGTTTTGAAGAGTEST: gi|308098080|gb|HO761251.1|HO761251
genomic: GTTGGCATTGTTCAAGACAAATAAAAAAGAAAGTCTGTTTGCTGATCGGGtattgctttc ... ctctattaggTATTTGATTTATTTGACACAAAGCACAATGGGATACTAGGTTTTGAAGAGT
EST: GTTGGCATTGTTCAAGACAAATAAAAAAGAAAGTCTGTTTACTGATCGGG TATTTGATTTATTTGACACAAAGCACAATGGGATACTAGGTTTTGAAGAGT
genomic: GTTGGCATTGTTCAAGACAAATAAAAAAGAAAGTCTGTTTGCTGATCGGGtattgctttc ... ctctattaggTATTTGATTTATTTGACACAAAGCACAATGGGATACTAGGTTTTGAAGAGT
cacaattcaacttgtgattggaatctaatatgaacttctctctaactctattaggTATTTGATTTATTTGACACAAAGCACAATGGGATACTAGGTTTTGAAGAGTTTGCTCGTGCTCTCTCCGTTTTTCATCCAAATGCCCCTATTGATGATAA
ctctaac putative branch site (score: 2)
cttctctctaactct CT-rich tract
aatctaatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgtttacgtattatttcaacattatattttgttcaaaaattgattcacaattcaacttgtgattggaatctaatatgaacttctctctaactctattaggTATTTGATTTATTTGACACAAAGCACAATGGGATACTAGGTTTTGAAGAGTTTGCTCGTGCTCTCTCCGTTTTTCATCCAAATGCCCCTATTGATGATAA
- - - - - - - - - - - - - - - - - - - - - attcaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - acttgtg