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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATATTATTACAACAAGAGGACAAGGCAATCAAGTTGGGAAAAACCTTTAGAATTGATGTCACCTATAGAGgtgagttgttttgataatttgttgctgttcttgtgaatgttactttttattatctgttggacatgctttgaaagtgtaatgtggtcaatcaaactggtat...

Basic information

species Glycine max
transcript GLYMA17G35120.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G35120.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G113365_T01 (Zea mays), 5'ss of exon 6
ATATTATTACAACAAGAGGACAAGGCAATCAAGTTGGGAAAAACCTTTAGAATTGATGTCACCTATAGAGgtgagttgttttgataatttgttgctgttcttgtgaatgttactttttattatctgttggac--atgctttgaaagtgtaatgtggtcaatcaaactggtat
 || || || || |||| ||||||||||||||||||||| |||||  | || |||||| ||||| | ||||| ||||||  || |   || |     | |   | |    ||   ||| | |||||||   |   | || || || | ||   |       |||  |  |  
GTACTACTATAATAAGAAGACAAGGCAATCAAGTTGGGAGAAACCAGTTGAGTTGATGACACCTTTGGAGgttagttgtgctgtttgcttatattcatgcagcttagccatatgattt-tgatctgttcagctagtcctatgtaaatttacatttcgtgcccaatatcatg-

upper sequence: GLYMA17G35120.1 (Glycine max), 5'ss of exon 4
lower sequence: AT1G44910.1 (Arabidopsis thaliana), 5'ss of exon 6
ATATTATTACAACAAGAGGACAAGGCAATCAAGTTGGGAAAAACCTTTAGAATTGATGTCACCTATAGAGgtgagttgttttgataatttgttgctgttcttgtgaatgttactttttattatctgttggacatgctttgaaagtgtaatgtggtcaatcaaactggtat--
 |||||||| |||||| |||||| |||||||| ||||||||||||| | ||| ||||| ||||  | ||||| |  |  ||  | | |    ||   |    |   || ||  ||||  |  |   ||   | | |   |    |     |||  | |    ||| ||    
GTATTATTATAACAAGCGGACAAAGCAATCAAATTGGGAAAAACCTCTTGAACTGATGACACCACTTGAGgtaa--tacttacaaagtagtctgtcttctaagatgattttcattttactggttgattaagcttaccaggcttttagttggtgtgccacttcactagtgatg

upper sequence: GLYMA17G35120.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv18s0001g08680.t01 (Vitis vinifera), 5'ss of exon 3
ATATTATTACAACAAGAGGACAAGGCAATCAAGTTGGGAAAAACCTTTAGAATTGATGTCACCTATAGAGgtgagttgttttgataatttgttgctgttcttgtgaatgttac---tttttattatctgttggacatgct--ttgaaagtgtaatgtggtcaatcaaactggtat
|||||| |||||||||| |||||| |  || ||||||||||| ||||| ||||| ||| | || || |||||||||| | ||  |  |||| ||    ||||   | | | ||    || | ||   |||    |||||   ||  || |||  ||   |   |   |   ||  
ATATTACTACAACAAGAAGACAAGACTTTCTAGTTGGGAAAAGCCTTTGGAATTAATGACTCCAATTGAGgtgagttatattactg-tttggtgt--ctcttagaagtttaacatccttctgtttcttgtgaagcatgcccctttgaattgttttggaatttgtatgatctgt--

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193610200|gb|FK565764.1|FK565764
EST:     CAAGGCAATCAAGTTGGGAAAAACCTTTAGAATTGATGTCACCTATAGAG                         AGAGCTGATGCATCAA
genomic: CAAGGCAATCAAGTTGGGAAAAACCTTTAGAATTGATGTCACCTATAGAGgtgagttgtt ... gatgtgacagAGAGCTGATGCATCAA