Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   
21  
 5'  3'   		22  
 5'  3'   		23  
 5'  3'   		24  
 5'  3'   		25  
 5'  3'   		26  
 5'  3'   		27  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCAATGAGAGAAATCATCAATGACAAAAGATATAATGCCCTAAAAACACTTGGTGAGCGAAAACAGGCTTTTAATGAGgtgagaaacaggcctcacagggaaaattgtatgcttaccttgaagtggatacttatgcttgcatcaactcattcagttgcgcgatatagttgcgtatcattttctatgattttgtaatgatcctgtgtgactttgtaacattgaatcaatttaatctttcattcag

Basic information

species Glycine max
transcript GLYMA17G35120.1
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G35120.1 (Glycine max), 5'ss of exon 13
lower sequence: Vv18s0001g08680.t01 (Vitis vinifera), 5'ss of exon 10
GCAATGAGAGAAATCATCAATGACAAAAGATATAATGCCCTAAAAACACTTGGTGAGCGAAAACAGGCTTTTAATGAGgtgagaaacag-------gcctcacagggaaaattgtatgcttac-cttgaagtggatacttatgc--ttgcatcaactcattcagttgcgcgatatagttgcgtatcatt--ttctatgattttgtaatgatcctgtgtgactttgtaacattgaatcaatttaatctttcat---tcag
||||||| ||  || || |||||||| ||||||  |||||| ||||||||||||||||| || || || |||||||| || || |  |        | | |  |    |  || | | || |   ||   |   | | | |||   ||  ||||   || |   | ||   | |   |  | | |  ||  | ||||    ||   | ||    |  |  |||| | | ||| ||   ||   || | | ||   | ||
GCAATGAAAGCGATAATTAATGACAAGAGATATGGTGCCCTGAAAACACTTGGTGAGCGGAAGCAAGCATTTAATGAAgtaagcattaaatgaaatgtcacgtaaatgattttttgtactgatgtttttggcacacattaatgtagttcaatcagtacaattcttggcataaaaatttcacttgtggttgctgctatttaattagcaagaagagggatatctttctgatatttaacatatcatatttattataatttag

upper sequence: GLYMA17G35120.1 (Glycine max), 5'ss of exon 13
lower sequence: PP1S174_92V6.1 (Physcomitrella patens), 5'ss of exon 14
GCAATGAGAGAAATCATCAATGACAAAAGATATAATGCCCTAAAAACACTTGGTGAGCGAAAACAGGCTTTTAATGAGgtgagaaacaggcctcacagggaaaattgtatgcttaccttgaagtggatacttatgcttgcatcaactcattcagttgcgcgatatagttgcgtatcattttctatgattttgtaatgatcctgtgtgactttgtaacattgaatcaatttaatctttcattcag
|| ||| |||  || ||||||||||||||||||  ||| || ||||||||||| ||||| || ||||||||||||||||  || |      ||  ||   || ||  |         ||  || |  | | | |  |  ||| | | |||| | |   | | || ||      ||||||     | | | |                                                     
GCTATGCGAGTTATTATCAATGACAAAAGATATGGTGCTCTGAAAACACTTGGAGAGCGCAAGCAGGCTTTTAATGAGgcaagta------ctttcacaaaatatctt--------ttttgagcgtttgcatttatt--catgagcacattgaatcaggtg-tagagccttcaatcattgcggctaactgtacgt-------------------------------------------------