Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   
21  
 5'  3'   		22  
 5'  3'   		23  
 5'  3'   		24  
 5'  3'   		25  
 5'  3'   		26  
 5'  3'   		27  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagttgatgtaacttgaattttttgtactcttttttttggtgtgtgtgtgtatgctgcaaatgctaactattagtttttaattgtaatccagGCAATGAGAGAAATCATCAATGACAAAAGATATAATGCCCTAAAAACACTTGGTGAGCGAAAACAGGCTTTTAATGAG

Basic information

species Glycine max
transcript GLYMA17G35120.1
intron # 12
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G35120.1 (Glycine max), 3'ss of exon 12
lower sequence: Vv18s0001g08680.t01 (Vitis vinifera), 3'ss of exon 9
-----------gtagttg-atgtaacttgaattttttgtactcttttttttggtgtgtgtgtgtatgctgcaaatgctaactattagtttttaattgtaat-ccagGCAATGAGAGAAATCATCAATGACAAAAGATATAATGCCCTAAAAACACTTGGTGAGCGAAAACAGGCTTTTAATGAG
            ||  |  || |||  | |  ||| |||| |  ||| |||    | | || |  | |  ||| ||||      |  | || || ||| ||  |||||||||| ||  || || |||||||| ||||||  |||||| ||||||||||||||||| || || || |||||||| 
gtaattatgttatatatatatataatattatatttatgtatttatttgtttttactatctg-gctttcctcaagtgcttgtccatgatattgaaatgtgatatcagGCAATGAAAGCGATAATTAATGACAAGAGATATGGTGCCCTGAAAACACTTGGTGAGCGGAAGCAAGCATTTAATGAA

upper sequence: GLYMA17G35120.1 (Glycine max), 3'ss of exon 12
lower sequence: PP1S174_92V6.1 (Physcomitrella patens), 3'ss of exon 13
------------------------------------------------------------------------------gtagttgatgta-acttgaattttttg--tactcttttttttggt--gtgtgtgtgtatgctgca-aatgctaactattagtttttaattgtaatccagGCAATGAGAGAAATCATCAATGACAAAAGATATAATGCCCTAAAAACACTTGGTGAGCGAAAACAGGCTTTTAATGAG
                                                                                ||||  |  | || || ||   |    || || | | ||  |    | |   |  |||||  |  |||  |   | |  | | |  |  |  ||||||| ||| |||  || ||||||||||||||||||  ||| || ||||||||||| ||||| || |||||||||||||||
gtttatcttctacttgcaactaacaccttgtcctttttgtacatgtacttttaatgtgtgttctatgaccaaatttattgagttcttccatacgtggatccatgaactattcatatcttcagataatataaatacatgctctatgatgtaattcactcatctgtt-tgattttccagGCTATGCGAGTTATTATCAATGACAAAAGATATGGTGCTCTGAAAACACTTGGAGAGCGCAAGCAGGCTTTTAATGAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tggtgtgtgtgtgtatgctgcaaatgctaactattagtttttaattgtaatccagGCAATGAGAGAAATCATCAATGACAAAAGATATAATGCCCTAAAAACACTTGGTGAGCGAAAACAGGCTTTTAATGAG
                           taactattagttttta  TA-rich tract