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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattggttaacataatcatattcagctttgctagcaaacactaaatatcttatatatttcctattaactatttgtcaaaataatataattttttggtgcttttgtaattctcattttctagaatcataatcagaagttcttgttttctcaaattaactagATATTATTACAACAAGAGGACAAGGCAATCAAGTTGGGAAAAACCTTTAGAATTGATGTCACCTATAGAG

Basic information

species Glycine max
transcript GLYMA17G35120.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G35120.1 (Glycine max), 3'ss of exon 3
lower sequence: AT1G44910.1 (Arabidopsis thaliana), 3'ss of exon 5
gtattggttaacataatcatattcagctttgctagcaaacactaaatatcttatatatttcctattaactatttgtcaaaataatataattttttggtgcttttgtaattctcattttctagaatcataatcagaagttcttgttttctcaaattaactagATATTATTACAACAAGAGGACAAGGCAATCAAGTTGGGAAAAACCTTTAGAATTGATGTCACCTATAGAG
                                                   |  ||  ||||| ||   | ||| |       ||  |  | | ||    |||  |  || |   | | |  | ||    |    |  |  | | | || |  ||  |||| |||||||| |||||| |||||| |||||||| ||||||||||||| | ||| ||||| ||||  | |||
---------------------------------------------------tccatgcttcct-tttttttttttttttttccatgcagatgtctg----tttcatggttttgggtctatgaattcgcttt----atctgatatatacttatcttt-ctagGTATTATTATAACAAGCGGACAAAGCAATCAAATTGGGAAAAACCTCTTGAACTGATGACACCACTTGAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193610200|gb|FK565764.1|FK565764
EST:     CAGCAATCCTTATCTGATTGGCAAGAGCACACTTCTGCTGATGGGAGAAG                         ATATTATTACAACAAGAGGACAAGGCAATCAAGTTGGGAAAAACCTTTAGA
genomic: CAGCAATCCTTATCTGATTGGCAAGAGCACACTTCTGCTGATGGGAGAAGgtattggtta ... aattaactagATATTATTACAACAAGAGGACAAGGCAATCAAGTTGGGAAAAACCTTTAGA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aattctcattttctagaatcataatcagaagttcttgttttctcaaattaactagATATTATTACAACAAGAGGACAAGGCAATCAAGTTGGGAAAAACCTTTAGAATTGATGTCACCTATAGAG
                                     ttttctcaaattaa  TA-rich tract