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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaattttttaaaaaatggagtgcatttcagtcattatggttgctgtcgttgaaccttttccttaactatttgcatttcattttagGCGAATAGTCATTGGCGAAAAATCCAAGATCGGTTAGAGGATGATGATAGATACTTGCGACTTGAAAAAATTGACTGCTTGCTAGTTTTCCAG

Basic information

species Glycine max
transcript GLYMA17G35120.1
intron # 17
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208252212|gb|GE043466.1|GE043466
EST:     GGAATATAGCAGAATATAGAAAATTTCTGGAGTCCTGTGACTATGTGAAG                         GCGAATAGTCATTGGCGAAAAATCCAAGATCGGTTAGAGGATGATGATAGA
genomic: GGAATATAGCAGAATATAGAAAATTTCTGGAGTCCTGTGACTATGTGAAGgtaatttttt ... ttcattttagGCGAATAGTCATTGGCGAAAAATCCAAGATCGGTTAGAGGATGATGATAGA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcattatggttgctgtcgttgaaccttttccttaactatttgcatttcattttagGCGAATAGTCATTGGCGAAAAATCCAAGATCGGTTAGAGGATGATGATAGATACTTGCGACTTGAAAAAATTGACTGCTTGCTAGTTTTCCAG
                             ccttaac  putative branch site (score: 3)
                                            tttcatttt  putative PPT
                                           atttcatttta  TA-rich tract