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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagttattgttgctaacttgatttaattttttaaattaaatggatataaattgaagaatataattcaatagcttgattgcttagttacaagtgagattgtttttcttaatttaactcttggtttaattttatgggtgaaacattgtgttaagaaatgtgtgactgatgtcttctttactcttgtgcttacagGTTAAAGAGAGGACTATATCTGGAGATTCATACTATGGCTCTCACGTGATGCAGTATGGTGATGTACGGCTTAGCAGTGATGTTCTCTTCCATTATTTGG

Basic information

species Glycine max
transcript GLYMA17G34900.1
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19347364|gb|BM892244.1|BM892244
EST:     TGACAGACACAATTTACGAACAGAAACTCTGCATCAACAATATAAATTG                         GTTAAAGAGAGGACTATATCTGGAGATTCATACTATGGCTCTCACGTGATG
genomic: TGACAGACACAATTTACGAACAGAAACTCTGCATCAACAATATAAATTGgtaagttatt ... gtgcttacagGTTAAAGAGAGGACTATATCTGGAGATTCATACTATGGCTCTCACGTGATG
EST: gi|11688434|gb|BF596110.1|BF596110
EST:     TGACAGACACAATTTACGAACAGAAACTCTGCATCAACAATATAAATTG                         GTTAAAGAGAGGACTATATCTGGAGATTCATACTATGGCTCTCACGTGATG
genomic: TGACAGACACAATTTACGAACAGAAACTCTGCATCAACAATATAAATTGgtaagttatt ... gtgcttacagGTTAAAGAGAGGACTATATCTGGAGATTCATACTATGGCTCTCACGTGATG
EST: gi|26047173|gb|CA784046.1|CA784046
EST:     TGACAGACACAATTTACGAACAGAAACTCTGCATCAACAATATAAATTG                         GTTAAAGAGAGGACTATATCTGGAGATTCATACTATGGCTCTCACGTGATG
genomic: TGACAGACACAATTTACGAACAGAAACTCTGCATCAACAATATAAATTGgtaagttatt ... gtgcttacagGTTAAAGAGAGGACTATATCTGGAGATTCATACTATGGCTCTCACGTGATG
EST: gi|151411506|gb|EV281317.1|EV281317
EST:     CAGACACAATTTACGAACAGAAACTCTGCATCAACAATATAAATTG                         GTTAAAGAGAGGACTATATCTGGAGATTCATACTATGGCTCTCACGTGATG
genomic: CAGACACAATTTACGAACAGAAACTCTGCATCAACAATATAAATTGgtaagttatt ... gtgcttacagGTTAAAGAGAGGACTATATCTGGAGATTCATACTATGGCTCTCACGTGATG
EST: gi|120533615|gb|EH261748.1|EH261748
EST:     TGACAGACACAATTTACGAACAGAAACTCTGCATCAACAATATAAATTG                         GTTAAAGAGAGGACTATATCTGGAGATTCATACTATGGCTCTCACGTGATG
genomic: TGACAGACACAATTTACGAACAGAAACTCTGCATCAACAATATAAATTGgtaagttatt ... gtgcttacagGTTAAAGAGAGGACTATATCTGGAGATTCATACTATGGCTCTCACGTGATG
EST: gi|120493304|gb|EH221471.1|EH221471
EST:     TGACAGACACAATTTACGAACAGAAACTCTGCATCAACAATATAAATTG                         GTTAAAGAGAGGACTATATCTGGAGATTCATACTATGGCTCTCACGTGATG
genomic: TGACAGACACAATTTACGAACAGAAACTCTGCATCAACAATATAAATTGgtaagttatt ... gtgcttacagGTTAAAGAGAGGACTATATCTGGAGATTCATACTATGGCTCTCACGTGATG
EST: gi|254338257|gb|GR849782.1|GR849782
EST:     TGACAGACACAATTTACGAACAGAAACTCTGCATCAACAATATAAATTG                         GTTAAAGAGAGGACTATATCTGGAGATTCATACTATGGCTCTCACGTGATG
genomic: TGACAGACACAATTTACGAACAGAAACTCTGCATCAACAATATAAATTGgtaagttatt ... gtgcttacagGTTAAAGAGAGGACTATATCTGGAGATTCATACTATGGCTCTCACGTGATG
EST: gi|120491889|gb|EH220056.1|EH220056
EST:     TGACAGACACAATTTACGAACAGAAACTCTGCATCAACAATATAAATTG                         GTTAAAGAGAGGACTATATCTGGAGATTCATACTATGGCTCTCACGTGATG
genomic: TGACAGACACAATTTACGAACAGAAACTCTGCATCAACAATATAAATTGgtaagttatt ... gtgcttacagGTTAAAGAGAGGACTATATCTGGAGATTCATACTATGGCTCTCACGTGATG
EST: gi|120529964|gb|EH258098.1|EH258098
EST:     TGACAGACACAATTTACGAACAGAAACTCTGCATCAACAATATAAATTG                         GTTAAAGAGAGGACTATATCTGGAGATTCATACTATGGCTCTCACGTGATG
genomic: TGACAGACACAATTTACGAACAGAAACTCTGCATCAACAATATAAATTGgtaagttatt ... gtgcttacagGTTAAAGAGAGGACTATATCTGGAGATTCATACTATGGCTCTCACGTGATG
EST: gi|26048896|gb|CA785349.1|CA785349
EST:     TGACAGACACAATTTACGAACAGAAACTCTGCATCAACAATATAAATTG                         GTTAAAGAGAGGACTATATCTGGAGATTCATACTATGGCTCTCACGTGATG
genomic: TGACAGACACAATTTACGAACAGAAACTCTGCATCAACAATATAAATTGgtaagttatt ... gtgcttacagGTTAAAGAGAGGACTATATCTGGAGATTCATACTATGGCTCTCACGTGATG
EST: gi|14126131|gb|BG790569.1|BG790569
EST:     CACAATTTACGAACAGAAACTCTGCATCAACAATATAAATTG                         GTTAAAGAGAGGACTATATCTGGAGATTCATACTATGGCTCTCACGTGATG
genomic: CACAATTTACGAACAGAAACTCTGCATCAACAATATAAATTGgtaagttatt ... gtgcttacagGTTAAAGAGAGGACTATATCTGGAGATTCATACTATGGCTCTCACGTGATG
EST: gi|120532682|gb|EH260815.1|EH260815
EST:     TGACAGACACAATTTACGAACAGAAACTCTGCATCAACAATATAAATTG                         GTTAAAGAGAGGACTATATCTGGAGATTCATACTATGGCTCTCACGTGATG
genomic: TGACAGACACAATTTACGAACAGAAACTCTGCATCAACAATATAAATTGgtaagttatt ... gtgcttacagGTTAAAGAGAGGACTATATCTGGAGATTCATACTATGGCTCTCACGTGATG
EST: gi|298164624|gb|HO014269.1|HO014269
EST:     TGACAGACACAATTTACGAACAGAAACTCTGCATCAACAATATAAATTG                         GTTAAAGAGAGGACTATATCTGGAGATTCATACTATGGCTCTCACGTGATG
genomic: TGACAGACACAATTTACGAACAGAAACTCTGCATCAACAATATAAATTGgtaagttatt ... gtgcttacagGTTAAAGAGAGGACTATATCTGGAGATTCATACTATGGCTCTCACGTGATG
EST: gi|22525336|gb|BU084147.1|BU084147
EST:     TGACAGACACAATTTACGAACAGAAACTCTGCATCAACAATATAAATTG                         GTTAAAGAGAGGACTATATCTGGAGATTCATACTATGGCTCTCACGTGATG
genomic: TGACAGACACAATTTACGAACAGAAACTCTGCATCAACAATATAAATTGgtaagttatt ... gtgcttacagGTTAAAGAGAGGACTATATCTGGAGATTCATACTATGGCTCTCACGTGATG
EST: gi|120532448|gb|EH260581.1|EH260581
EST:     TGACAGACACAATTTACGAACAGAAACTCTGCATCAACAATATAAATTG                         GTTAAAGAGAGGACTATATCTGGAGATTCATACTATGGCTCTCACGTGATG
genomic: TGACAGACACAATTTACGAACAGAAACTCTGCATCAACAATATAAATTGgtaagttatt ... gtgcttacagGTTAAAGAGAGGACTATATCTGGAGATTCATACTATGGCTCTCACGTGATG
EST: gi|120531033|gb|EH259166.1|EH259166
EST:     TGACAGACACAATTTACGAACAGAAACTCTGCATCAACAATATAAATTG                         GTTAAAGAGAGGACTATATCTGGAGATTCATACTATGGCTCTCACGTGATG
genomic: TGACAGACACAATTTACGAACAGAAACTCTGCATCAACAATATAAATTGgtaagttatt ... gtgcttacagGTTAAAGAGAGGACTATATCTGGAGATTCATACTATGGCTCTCACGTGATG
EST: gi|23050105|gb|BU576969.1|BU576969
EST:     GTGACAGACACAATTTACGAACAGAAACTCTGCATCAACAATATAAATTG                         GTTAAAGAGAGGACTATATCTGGAGATTCATACTATGGCTCTCACGTGATG
genomic: GTGACAGACACAATTTACGAACAGAAACTCTGCATCAACAATATAAATTGgtaagttatt ... gtgcttacagGTTAAAGAGAGGACTATATCTGGAGATTCATACTATGGCTCTCACGTGATG
EST: gi|26047160|gb|CA784037.1|CA784037
EST:     TGACAGACACAATTTACGAACAGAAACTCTGCATCAACAATATAAATTG                         GTTAAAGAGAGGACTATATCTGGAGATTCATACTATGGCTCTCACGTGATG
genomic: TGACAGACACAATTTACGAACAGAAACTCTGCATCAACAATATAAATTGgtaagttatt ... gtgcttacagGTTAAAGAGAGGACTATATCTGGAGATTCATACTATGGCTCTCACGTGATG
EST: gi|10231540|gb|BE800428.1|BE800428
EST:     TGACAGACACAATTTACGAACAGAAACTCTGCATCAACAATATAAATTG                         GTTAAAGAGAGGACTATATCTGGAGATTCATACTATGGCTCTCACGTGATG
genomic: TGACAGACACAATTTACGAACAGAAACTCTGCATCAACAATATAAATTGgtaagttatt ... gtgcttacagGTTAAAGAGAGGACTATATCTGGAGATTCATACTATGGCTCTCACGTGATG
EST: gi|15662601|gb|BI699972.1|BI699972
EST:     TGACAGACACAATTTACGAACAGAAACTCTGCATCAACAATATAAATTG                         GTTAAAGAGAGGACTATATCTGGAGATTCATACTATGGCTCTCACGTGATG
genomic: TGACAGACACAATTTACGAACAGAAACTCTGCATCAACAATATAAATTGgtaagttatt ... gtgcttacagGTTAAAGAGAGGACTATATCTGGAGATTCATACTATGGCTCTCACGTGATG
EST: gi|120529568|gb|EH257702.1|EH257702
EST:     TGACAGACACAATTTACGAACAGAAACTCTGCATCAACAATATAAATTG                         GTTAAAGAGAGGACTATATCTGGAGATTCATACTATGGCTCTCACGTGATG
genomic: TGACAGACACAATTTACGAACAGAAACTCTGCATCAACAATATAAATTGgtaagttatt ... gtgcttacagGTTAAAGAGAGGACTATATCTGGAGATTCATACTATGGCTCTCACGTGATG
EST: gi|151413119|gb|EV282927.1|EV282927
EST:     TGACAGACACAATTTACGAACAGAAACTCTGCATCAACAATATAAATTG                         GTTAAAGAGAGGACTATATCTGGAGATTCATACTATGGCTCCCACGTGATG
genomic: TGACAGACACAATTTACGAACAGAAACTCTGCATCAACAATATAAATTGgtaagttatt ... gtgcttacagGTTAAAGAGAGGACTATATCTGGAGATTCATACTATGGCTCTCACGTGATG
EST: gi|9902841|gb|BE611809.1|BE611809
EST:     TGACAGACACAATTTACGAACAGAAACTCTGCATCAACAATATAAATTG                         GTTAAAGAGAGGACTATATCTGGAGATTCATACTATGGCTCTCACGTGATG
genomic: TGACAGACACAATTTACGAACAGAAACTCTGCATCAACAATATAAATTGgtaagttatt ... gtgcttacagGTTAAAGAGAGGACTATATCTGGAGATTCATACTATGGCTCTCACGTGATG
EST: gi|298192632|gb|HO033066.1|HO033066
EST:     TGACAGACACAATTTACGAACAGAAACTCTGCATCAACAATATAAATTG                         GTTAAAGAGAGGACTATATCTGGAGATTCATACTATGGCTCTCACGTGATG
genomic: TGACAGACACAATTTACGAACAGAAACTCTGCATCAACAATATAAATTGgtaagttatt ... gtgcttacagGTTAAAGAGAGGACTATATCTGGAGATTCATACTATGGCTCTCACGTGATG
EST: gi|10231712|gb|BE800600.1|BE800600
EST:     TGACAGACACAATTTACGAACAGAAACTCTGCATCAACAATATAAATTG                         GTTAAAGAGAGGACTATATCTGGAGATTCATACTATGGCTCTCACGTGATG
genomic: TGACAGACACAATTTACGAACAGAAACTCTGCATCAACAATATAAATTGgtaagttatt ... gtgcttacagGTTAAAGAGAGGACTATATCTGGAGATTCATACTATGGCTCTCACGTGATG
EST: gi|10232084|gb|BE800972.1|BE800972
EST:     TGACAGACACAATTTACGAACAGAAACTCTGCATCAACAATATAAATTG                         GTTAAAGAGAGGACTATATCTGGAGATTCATACTATGGCTCTCACGTGATG
genomic: TGACAGACACAATTTACGAACAGAAACTCTGCATCAACAATATAAATTGgtaagttatt ... gtgcttacagGTTAAAGAGAGGACTATATCTGGAGATTCATACTATGGCTCTCACGTGATG
EST: gi|120491705|gb|EH219872.1|EH219872
EST:     TGACAGACACAATTTACGAACAGAAACTCTGCATCAACAATATAAATTG                         GTTAAAGAGAGGACTATATCTGGAGATTCATACTATGGCTCTCACGTGATG
genomic: TGACAGACACAATTTACGAACAGAAACTCTGCATCAACAATATAAATTGgtaagttatt ... gtgcttacagGTTAAAGAGAGGACTATATCTGGAGATTCATACTATGGCTCTCACGTGATG
EST: gi|9986535|gb|BE660643.1|BE660643
EST:     TGACAGACACAATTTACGAACAGAAACTCTGCATCAACAATATAAATTG                         GTTAAAGAGAGGACTATATCTGGAGATTCATACTATGGCTCTCACGTGATG
genomic: TGACAGACACAATTTACGAACAGAAACTCTGCATCAACAATATAAATTGgtaagttatt ... gtgcttacagGTTAAAGAGAGGACTATATCTGGAGATTCATACTATGGCTCTCACGTGATG
EST: gi|15199399|gb|BI423811.1|BI423811
EST:     TGACAGACACGATTTACGAACAGAAACTCTGCATCAACAATATAAATTG                         GTTAAAGAGAGGACTATATCTGGAGATTCATACTATGGCTCTCACGTGATG
genomic: TGACAGACACAATTTACGAACAGAAACTCTGCATCAACAATATAAATTGgtaagttatt ... gtgcttacagGTTAAAGAGAGGACTATATCTGGAGATTCATACTATGGCTCTCACGTGATG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaacattgtgttaagaaatgtgtgactgatgtcttctttactcttgtgcttacagGTTAAAGAGAGGACTATATCTGGAGATTCATACTATGGCTCTCACGTGATGCAGTATGGTGATGTACGGCTTAGCAGTGATGTTCTCTTCCATTATTTGG
                       gactgat  putative branch site (score: 3)
                               tcttctttactcttgt  CT-rich tract
          ttaagaaat  TA-rich tract