1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...ttgcacttactatttttttgttagatcagaagaattttattttatataagtaatgtaaattttttagggattaatgttaattttctttacttgtgagcagTGACAGACACAATTTACGAACAGAAACTCTGCATCAACAATATAAATTG
species | Glycine max |
transcript | GLYMA17G34900.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TATTCAACCTGCTTGGGTGATCTGTACAGTGTTGCTTGGATGGAAGACAG TGACAGACACAATTTACGAACAGAAACTCTGCATCAACAATATAAATTGEST: gi|11688434|gb|BF596110.1|BF596110
genomic: TATTCAACCTGCTTGGGTGATCTGTACAGTGTTGCTTGGATGGAAGACAGgtatgtgcat ... ttgtgagcagTGACAGACACAATTTACGAACAGAAACTCTGCATCAACAATATAAATTG
EST: TATTCAACCTGCTTGGGTGATCTGTACAGTGTTGCTTGGATGGAAGACAG TGACAGACACAATTTACGAACAGAAACTCTGCATCAACAATATAAATTGEST: gi|26047173|gb|CA784046.1|CA784046
genomic: TATTCAACCTGCTTGGGTGATCTGTACAGTGTTGCTTGGATGGAAGACAGgtatgtgcat ... ttgtgagcagTGACAGACACAATTTACGAACAGAAACTCTGCATCAACAATATAAATTG
EST: ACCTGCTTGGGTGATCTGTACAGTGTTGCTTGGATGGAAGACAG TGACAGACACAATTTACGAACAGAAACTCTGCATCAACAATATAAATTGEST: gi|120533615|gb|EH261748.1|EH261748
genomic: ACCTGCTTGGGTGATCTGTACAGTGTTGCTTGGATGGAAGACAGgtatgtgcat ... ttgtgagcagTGACAGACACAATTTACGAACAGAAACTCTGCATCAACAATATAAATTG
EST: TATTCAACCTGCTTGGGTGATCTGTACAGTGTTGCTTGGATGGAAGACAG TGACAGACACAATTTACGAACAGAAACTCTGCATCAACAATATAAATTGEST: gi|120493304|gb|EH221471.1|EH221471
genomic: TATTCAACCTGCTTGGGTGATCTGTACAGTGTTGCTTGGATGGAAGACAGgtatgtgcat ... ttgtgagcagTGACAGACACAATTTACGAACAGAAACTCTGCATCAACAATATAAATTG
EST: TATTCAACCTGCTTGGGTGATCTGTACAGTGTTGCTTGGATGGAAGACAG TGACAGACACAATTTACGAACAGAAACTCTGCATCAACAATATAAATTGEST: gi|254338257|gb|GR849782.1|GR849782
genomic: TATTCAACCTGCTTGGGTGATCTGTACAGTGTTGCTTGGATGGAAGACAGgtatgtgcat ... ttgtgagcagTGACAGACACAATTTACGAACAGAAACTCTGCATCAACAATATAAATTG
EST: TATTCAACCTGCTTGGGTGATCTGTACAGTGTTGCTTGGATGGAAGACAG TGACAGACACAATTTACGAACAGAAACTCTGCATCAACAATATAAATTGEST: gi|120491889|gb|EH220056.1|EH220056
genomic: TATTCAACCTGCTTGGGTGATCTGTACAGTGTTGCTTGGATGGAAGACAGgtatgtgcat ... ttgtgagcagTGACAGACACAATTTACGAACAGAAACTCTGCATCAACAATATAAATTG
EST: TATTCAACCTGCTTGGGTGATCTGTACAGTGTTGCTTGGATGGAAGACAG TGACAGACACAATTTACGAACAGAAACTCTGCATCAACAATATAAATTGEST: gi|120529964|gb|EH258098.1|EH258098
genomic: TATTCAACCTGCTTGGGTGATCTGTACAGTGTTGCTTGGATGGAAGACAGgtatgtgcat ... ttgtgagcagTGACAGACACAATTTACGAACAGAAACTCTGCATCAACAATATAAATTG
EST: TATTCAACCTGCTTGGGTGATCTGTACAGTGTTGCTTGGATGGAAGACAG TGACAGACACAATTTACGAACAGAAACTCTGCATCAACAATATAAATTGEST: gi|26048896|gb|CA785349.1|CA785349
genomic: TATTCAACCTGCTTGGGTGATCTGTACAGTGTTGCTTGGATGGAAGACAGgtatgtgcat ... ttgtgagcagTGACAGACACAATTTACGAACAGAAACTCTGCATCAACAATATAAATTG
EST: TATTCAACCTGCTTGGGTGATCTGTACAGTGTTGCTTGGATGGAAGACAG TGACAGACACAATTTACGAACAGAAACTCTGCATCAACAATATAAATTGEST: gi|120532682|gb|EH260815.1|EH260815
genomic: TATTCAACCTGCTTGGGTGATCTGTACAGTGTTGCTTGGATGGAAGACAGgtatgtgcat ... ttgtgagcagTGACAGACACAATTTACGAACAGAAACTCTGCATCAACAATATAAATTG
EST: TATTCAACCTGCTTGGGTGATCTGTACAGTGTTGCTTGGATGGAAGACAG TGACAGACACAATTTACGAACAGAAACTCTGCATCAACAATATAAATTGEST: gi|298164624|gb|HO014269.1|HO014269
genomic: TATTCAACCTGCTTGGGTGATCTGTACAGTGTTGCTTGGATGGAAGACAGgtatgtgcat ... ttgtgagcagTGACAGACACAATTTACGAACAGAAACTCTGCATCAACAATATAAATTG
EST: TATTCAACCTGCTTGGGTGATCTGTACAGTGTTGCTTGGATGGAAGACAG TGACAGACACAATTTACGAACAGAAACTCTGCATCAACAATATAAATTGEST: gi|22525336|gb|BU084147.1|BU084147
genomic: TATTCAACCTGCTTGGGTGATCTGTACAGTGTTGCTTGGATGGAAGACAGgtatgtgcat ... ttgtgagcagTGACAGACACAATTTACGAACAGAAACTCTGCATCAACAATATAAATTG
EST: TATTCAACCTGCTTGGGTGATCTGTACAGTGTTGCTTGGATGGAAGACAG TGACAGACACAATTTACGAACAGAAACTCTGCATCAACAATATAAATTGEST: gi|120532448|gb|EH260581.1|EH260581
genomic: TATTCAACCTGCTTGGGTGATCTGTACAGTGTTGCTTGGATGGAAGACAGgtatgtgcat ... ttgtgagcagTGACAGACACAATTTACGAACAGAAACTCTGCATCAACAATATAAATTG
EST: TATTCAACCTGCTTGGGTGATCTGTACAGTGTTGCTTGGATGGAAGACAG TGACAGACACAATTTACGAACAGAAACTCTGCATCAACAATATAAATTGEST: gi|120531033|gb|EH259166.1|EH259166
genomic: TATTCAACCTGCTTGGGTGATCTGTACAGTGTTGCTTGGATGGAAGACAGgtatgtgcat ... ttgtgagcagTGACAGACACAATTTACGAACAGAAACTCTGCATCAACAATATAAATTG
EST: TACAGTGTTGCTTGGATGGAAGACAG TGACAGACACAATTTACGAACAGAAACTCTGCATCAACAATATAAATTGEST: gi|26047160|gb|CA784037.1|CA784037
genomic: TACAGTGTTGCTTGGATGGAAGACAGgtatgtgcat ... ttgtgagcagTGACAGACACAATTTACGAACAGAAACTCTGCATCAACAATATAAATTG
EST: CTTGGGTGATCTGTACAGTGTTGCTTGGATGGAAGACAG TGACAGACACAATTTACGAACAGAAACTCTGCATCAACAATATAAATTGEST: gi|10231540|gb|BE800428.1|BE800428
genomic: CTTGGGTGATCTGTACAGTGTTGCTTGGATGGAAGACAGgtatgtgcat ... ttgtgagcagTGACAGACACAATTTACGAACAGAAACTCTGCATCAACAATATAAATTG
EST: TATTCAACCTGCTTGGGTGATCTGTACAGTGTTGCTTGGATGGAAGACAG TGACAGACACAATTTACGAACAGAAACTCTGCATCAACAATATAAATTGEST: gi|15662601|gb|BI699972.1|BI699972
genomic: TATTCAACCTGCTTGGGTGATCTGTACAGTGTTGCTTGGATGGAAGACAGgtatgtgcat ... ttgtgagcagTGACAGACACAATTTACGAACAGAAACTCTGCATCAACAATATAAATTG
EST: TATTCAACCTGCTTGGGTGATCTGTACAGTGTTGCTTGGATGGAAGACAG TGACAGACACAATTTACGAACAGAAACTCTGCATCAACAATATAAATTGEST: gi|120529568|gb|EH257702.1|EH257702
genomic: TATTCAACCTGCTTGGGTGATCTGTACAGTGTTGCTTGGATGGAAGACAGgtatgtgcat ... ttgtgagcagTGACAGACACAATTTACGAACAGAAACTCTGCATCAACAATATAAATTG
EST: TATTCAACCTGCTTGGGTGATCTGTACAGTGTTGCTTGGATGGAAGACAG TGACAGACACAATTTACGAACAGAAACTCTGCATCAACAATATAAATTGEST: gi|151413119|gb|EV282927.1|EV282927
genomic: TATTCAACCTGCTTGGGTGATCTGTACAGTGTTGCTTGGATGGAAGACAGgtatgtgcat ... ttgtgagcagTGACAGACACAATTTACGAACAGAAACTCTGCATCAACAATATAAATTG
EST: TTGCTTGGATGGAAGACAG TGACAGACACAATTTACGAACAGAAACTCTGCATCAACAATATAAATTGEST: gi|9902841|gb|BE611809.1|BE611809
genomic: TTGCTTGGATGGAAGACAGgtatgtgcat ... ttgtgagcagTGACAGACACAATTTACGAACAGAAACTCTGCATCAACAATATAAATTG
EST: TATTCAACCTGCTTGGGTGATCTGTACAGTGTTGCTTGGATGGAAGACAG TGACAGACACAATTTACGAACAGAAACTCTGCATCAACAATATAAATTGEST: gi|298192632|gb|HO033066.1|HO033066
genomic: TATTCAACCTGCTTGGGTGATCTGTACAGTGTTGCTTGGATGGAAGACAGgtatgtgcat ... ttgtgagcagTGACAGACACAATTTACGAACAGAAACTCTGCATCAACAATATAAATTG
EST: GGATGGAAGACAG TGACAGACACAATTTACGAACAGAAACTCTGCATCAACAATATAAATTGEST: gi|10231712|gb|BE800600.1|BE800600
genomic: GGATGGAAGACAGgtatgtgcat ... ttgtgagcagTGACAGACACAATTTACGAACAGAAACTCTGCATCAACAATATAAATTG
EST: TATTCAACCTGCTTGGGTGATCTGTACAGTGTTGCTTGGATGGAAGACAG TGACAGACACAATTTACGAACAGAAACTCTGCATCAACAATATAAATTGEST: gi|10232084|gb|BE800972.1|BE800972
genomic: TATTCAACCTGCTTGGGTGATCTGTACAGTGTTGCTTGGATGGAAGACAGgtatgtgcat ... ttgtgagcagTGACAGACACAATTTACGAACAGAAACTCTGCATCAACAATATAAATTG
EST: TATTCAACCTGCTTGGGTGATCTGTACAGTGTTGCTTGGATGGAAGACAG TGACAGACACAATTTACGAACAGAAACTCTGCATCAACAATATAAATTGEST: gi|120491705|gb|EH219872.1|EH219872
genomic: TATTCAACCTGCTTGGGTGATCTGTACAGTGTTGCTTGGATGGAAGACAGgtatgtgcat ... ttgtgagcagTGACAGACACAATTTACGAACAGAAACTCTGCATCAACAATATAAATTG
EST: CAACCTGCTTGGGTGATCTGTACAGTGTTGCTTGGATGGAAGACAG TGACAGACACAATTTACGAACAGAAACTCTGCATCAACAATATAAATTGEST: gi|9986535|gb|BE660643.1|BE660643
genomic: CAACCTGCTTGGGTGATCTGTACAGTGTTGCTTGGATGGAAGACAGgtatgtgcat ... ttgtgagcagTGACAGACACAATTTACGAACAGAAACTCTGCATCAACAATATAAATTG
EST: TATTCAACCTGCTTGGGTGATCTGTACAGTGTTGCTTGGATGGAAGACAG TGACAGACACAATTTACGAACAGAAACTCTGCATCAACAATATAAATTGEST: gi|15199399|gb|BI423811.1|BI423811
genomic: TATTCAACCTGCTTGGGTGATCTGTACAGTGTTGCTTGGATGGAAGACAGgtatgtgcat ... ttgtgagcagTGACAGACACAATTTACGAACAGAAACTCTGCATCAACAATATAAATTG
EST: TATTCAACCTGCTTGGGTGATCTGTACAGTGTTGCTTGGATGGAAGACAG TGACAGACACGATTTACGAACAGAAACTCTGCATCAACAATATAAATTG
genomic: TATTCAACCTGCTTGGGTGATCTGTACAGTGTTGCTTGGATGGAAGACAGgtatgtgcat ... ttgtgagcagTGACAGACACAATTTACGAACAGAAACTCTGCATCAACAATATAAATTG
ataagtaatgtaaattttttagggattaatgttaattttctttacttgtgagcagTGACAGACACAATTTACGAACAGAAACTCTGCATCAACAATATAAATTG
tgttaat putative branch site (score: 3)
ttttctttacttgt CT-rich tract
taatgtaaatttttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttgcacttactatttttttgttagatcagaagaattttattttatataagtaatgtaaattttttagggattaatgttaattttctttacttgtgagcagTGACAGACACAATTTACGAACAGAAACTCTGCATCAACAATATAAATTG
- -cacttac