Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGATGCCTGCTGGTCCTTACTTATATGCGGATGATCTGATTGAAGTCTTGAAGAAAAAACATGCTTCTGGAACGTATAAAAACCTAgtaagtcactaatatagttatcctcttcttaattttggtaccaatcctgtttaagctgtttaataatactacctctggtccctattataagcaacaagtg...

Basic information

species Glycine max
transcript GLYMA17G34900.1
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19347364|gb|BM892244.1|BM892244
EST:     TGATTGAAGTCTTGAAGAAAAAACATGCTTCTGGAACGTATAAAAACCTA                         GTATTTTATCTGGAGGCATGTGAATCTGGGAGTATCTTTGAAGGTCTTCTT
genomic: TGATTGAAGTCTTGAAGAAAAAACATGCTTCTGGAACGTATAAAAACCTAgtaagtcact ... ggtaatgcagGTATTTTATCTGGAGGCATGTGAATCTGGGAGTATCTTTGAAGGTCTTCTT
EST: gi|11688434|gb|BF596110.1|BF596110
EST:     TGATTGAAGTCTTGAAGAAAAAACATGCTTCTGGAACGTATAAAAACCTA                         GTATTTTATCTGGAGGCATGTGAATCTGGGAGTATCTTTGAAGGTCTTCTT
genomic: TGATTGAAGTCTTGAAGAAAAAACATGCTTCTGGAACGTATAAAAACCTAgtaagtcact ... ggtaatgcagGTATTTTATCTGGAGGCATGTGAATCTGGGAGTATCTTTGAAGGTCTTCTT
EST: gi|120533615|gb|EH261748.1|EH261748
EST:     TGATTGAAGTCTTGAAGAAAAAACATGCTTCTGGAACGTATAAAAACCTA                         GTATTTTATCTGGAGGCATGTGAATCTGGGAGTATCTTTGAAGGTCTTCTT
genomic: TGATTGAAGTCTTGAAGAAAAAACATGCTTCTGGAACGTATAAAAACCTAgtaagtcact ... ggtaatgcagGTATTTTATCTGGAGGCATGTGAATCTGGGAGTATCTTTGAAGGTCTTCTT
EST: gi|254338257|gb|GR849782.1|GR849782
EST:     TGATTGAAGTCTTGAAGAAAAAACATGCTTCTGGAACGTATAAAAACCTA                         GTATTTTATCTGGAGGCATGTGAATCTGGGAGTATCTTTGAAGGTCTTCTT
genomic: TGATTGAAGTCTTGAAGAAAAAACATGCTTCTGGAACGTATAAAAACCTAgtaagtcact ... ggtaatgcagGTATTTTATCTGGAGGCATGTGAATCTGGGAGTATCTTTGAAGGTCTTCTT
EST: gi|209707983|gb|BW662138.1|BW662138
EST:     TGATTGAAGTCTTGAAGAAAAAACATGCTTCTGGAACGTATAAAAACCTA                         GTATTTTATCTGGAGGCATGTGAATCTGGGAGTATCTTTGAAGGTCTTCTT
genomic: TGATTGAAGTCTTGAAGAAAAAACATGCTTCTGGAACGTATAAAAACCTAgtaagtcact ... ggtaatgcagGTATTTTATCTGGAGGCATGTGAATCTGGGAGTATCTTTGAAGGTCTTCTT
EST: gi|120529964|gb|EH258098.1|EH258098
EST:     TGATTGAAGTCTTGAAGAAAAAACATGCTTCTGGAACGTATAAAAACCTA                         GTATTTTATCTGGAGGCATGTGAATCTGGGAGTATCTTTGAAGGTCTTCTT
genomic: TGATTGAAGTCTTGAAGAAAAAACATGCTTCTGGAACGTATAAAAACCTAgtaagtcact ... ggtaatgcagGTATTTTATCTGGAGGCATGTGAATCTGGGAGTATCTTTGAAGGTCTTCTT
EST: gi|26048896|gb|CA785349.1|CA785349
EST:     TGATTGAAGTCTTGAAGAAAAAACATGCTTCTGGAACGTATAAAAACCTA                         GTATTTTATCTGGAGGCATGTGAATCTGGGAGTATCTTTGAAGGTCTTCTT
genomic: TGATTGAAGTCTTGAAGAAAAAACATGCTTCTGGAACGTATAAAAACCTAgtaagtcact ... ggtaatgcagGTATTTTATCTGGAGGCATGTGAATCTGGGAGTATCTTTGAAGGTCTTCTT
EST: gi|298164624|gb|HO014269.1|HO014269
EST:     TGATTGAAGTCTTGAAGAAAAAACATGCTTCTGGAACGTATAAAAACCTA                         GTATTTTATCTGGAGGCATGTGAATCTGGGAGTATCTTTGAAGGTCTTCTT
genomic: TGATTGAAGTCTTGAAGAAAAAACATGCTTCTGGAACGTATAAAAACCTAgtaagtcact ... ggtaatgcagGTATTTTATCTGGAGGCATGTGAATCTGGGAGTATCTTTGAAGGTCTTCTT
EST: gi|22525336|gb|BU084147.1|BU084147
EST:     AACGTATAAAAACCTA                         GTATTTTATCTGGAGGCATGTGAATCTGGGAGTATCTTTGAAGGTCTTCTT
genomic: AACGTATAAAAACCTAgtaagtcact ... ggtaatgcagGTATTTTATCTGGAGGCATGTGAATCTGGGAGTATCTTTGAAGGTCTTCTT
EST: gi|120529568|gb|EH257702.1|EH257702
EST:     TGATTGAAGTCTTGAAGAAAAAACATGCTTCTGGAACGTATAAAAACCTA                         GTATTTTATCTGGAGGCATGTGAATCTGGGAGTATCTTTGAAGGTCTTCTT
genomic: TGATTGAAGTCTTGAAGAAAAAACATGCTTCTGGAACGTATAAAAACCTAgtaagtcact ... ggtaatgcagGTATTTTATCTGGAGGCATGTGAATCTGGGAGTATCTTTGAAGGTCTTCTT
EST: gi|10231712|gb|BE800600.1|BE800600
EST:     TGATTGAAGTCTTGAAGAAAAAACATGCTTCTGGAACGTATAAAAACCTA                         GTATTTTATCTGGAGGCATGTGAATCTGGGAGTATCTTTGAAGGTCTTCTT
genomic: TGATTGAAGTCTTGAAGAAAAAACATGCTTCTGGAACGTATAAAAACCTAgtaagtcact ... ggtaatgcagGTATTTTATCTGGAGGCATGTGAATCTGGGAGTATCTTTGAAGGTCTTCTT
EST: gi|254323900|gb|GR840433.1|GR840433
EST:     TGATTGAAGTCTTGAAGAAAAAACATGCTTCTGGAACGTATAAAAACCTA                         GTATTTTATCTGGAGGCATGTGAATCTGGGAGTATCTTTGAAGGTCTTCTT
genomic: TGATTGAAGTCTTGAAGAAAAAACATGCTTCTGGAACGTATAAAAACCTAgtaagtcact ... ggtaatgcagGTATTTTATCTGGAGGCATGTGAATCTGGGAGTATCTTTGAAGGTCTTCTT
EST: gi|9986535|gb|BE660643.1|BE660643
EST:     GGAACGTATAAAAACCTA                         GTATTTTATCTGGAGGCATGTGAATCTGGGAGTATCTTTGAAGGTCTTCTT
genomic: GGAACGTATAAAAACCTAgtaagtcact ... ggtaatgcagGTATTTTATCTGGAGGCATGTGAATCTGGGAGTATCTTTGAAGGTCTTCTT
EST: gi|15199399|gb|BI423811.1|BI423811
EST:     GAAGTCTTGAAGAAAAAACATGCTTCTGGAACGTATAAAAACCTA                         GTATTTTATCTGGAGGCATGTGAATCTGGGAGTATCTTTGAAGGTCTTCTT
genomic: GAAGTCTTGAAGAAAAAACATGCTTCTGGAACGTATAAAAACCTAgtaagtcact ... ggtaatgcagGTATTTTATCTGGAGGCATGTGAATCTGGGAGTATCTTTGAAGGTCTTCTT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GGATGCCTGCTGGTCCTTACTTATATGCGGATGATCTGATTGAAGTCTTGAAGAAAAAACATGCTTCTGGAACGTATAAAAACCTAgtaagtcactaatatagttatcctcttcttaattttggtaccaatcctgtttaagctgtttaataatactacctctggtccctattataagcaacaagtg

- - - - - - - - - - - - - - - - - - -  TTGAAG
- - - - - - - - - - - - - - - - - - - - - - -  TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cctcttc