1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
TTTTATGTATGATGACATTGCATTCAATGGGGAAAACCCAAGGCCTGGAGTCATCATTAACAAACCAGATGGAGGTGATGTTTATGAAGGAGTTCCAAAGgtaagttatgttagttttttaacatcccgtattttattgctatttcaagttgagtaaattaccccaatcatttttgaggttttgtgaaattacacaaaca...
species | Glycine max |
transcript | GLYMA17G34900.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: TCATCATTAACAAACCAGATGGAGGTGATGTTTATGAAGGAGTTCCAAAG GATTACACCGGCGAAGATGTTACTGTTGGTAACTTTTTTGCTGCTTTACTTEST: gi|213614025|gb|DB960976.1|DB960976
genomic: TCATCATTAACAAACCAGATGGAGGTGATGTTTATGAAGGAGTTCCAAAGgtaagttatg ... tttatggcagGATTACACCGGCGAAGATGTTACTGTTGGTAACTTTTTTGCTGCTTTACTT
EST: TCATCATTAACAAACCAGATGGAGGTGATGTTTATGAAGGAGTTCCAAAG GATTACACCGGCGAAGATGTTACTGTTGGTAACTTTTTTGCTGCTTTACTTEST: gi|254323900|gb|GR840433.1|GR840433
genomic: TCATCATTAACAAACCAGATGGAGGTGATGTTTATGAAGGAGTTCCAAAGgtaagttatg ... tttatggcagGATTACACCGGCGAAGATGTTACTGTTGGTAACTTTTTTGCTGCTTTACTT
EST: TCATCATTAACAAACCAGATGGAGGTGATGTTTATGAAGGAGTTCCAAAG GATTACACCGGCGAAGATGTTACTGTTGGTAACNNNNNNNGCTGCTTTACT
genomic: TCATCATTAACAAACCAGATGGAGGTGATGTTTATGAAGGAGTTCCAAAGgtaagttatg ... tttatggcagGATTACACCGGCGAAGATGTTACTGTTGGTAAC-TTTTTTGCTGCTTTACT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTTTATGTATGATGACATTGCATTCAATGGGGAAAACCCAAGGCCTGGAGTCATCATTAACAAACCAGATGGAGGTGATGTTTATGAAGGAGTTCCAAAGgtaagttatgttagttttttaacatcccgtattttattgctatttcaagttgagtaaattaccccaatcatttttgaggttttgtgaaattacacaaaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG