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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTAGTTGGGGAACATATTGCCCTGGGGAGTATCCTAGTCCTCCCCCAGAATATTCAACCTGCTTGGGTGATCTGTACAGTGTTGCTTGGATGGAAGACAGgtatgtgcataataagtaatcataaatgagatttatgtgaatatgtgatgatacttatatactcatgatccatgcaatcacaatggagtagttcaatgcc...

Basic information

species Glycine max
transcript GLYMA17G34900.1
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19347364|gb|BM892244.1|BM892244
EST:     TATTCAACCTGCTTGGGTGATCTGTACAGTGTTGCTTGGATGGAAGACAG                         TGACAGACACAATTTACGAACAGAAACTCTGCATCAACAATATAAATTG
genomic: TATTCAACCTGCTTGGGTGATCTGTACAGTGTTGCTTGGATGGAAGACAGgtatgtgcat ... ttgtgagcagTGACAGACACAATTTACGAACAGAAACTCTGCATCAACAATATAAATTG
EST: gi|11688434|gb|BF596110.1|BF596110
EST:     TATTCAACCTGCTTGGGTGATCTGTACAGTGTTGCTTGGATGGAAGACAG                         TGACAGACACAATTTACGAACAGAAACTCTGCATCAACAATATAAATTG
genomic: TATTCAACCTGCTTGGGTGATCTGTACAGTGTTGCTTGGATGGAAGACAGgtatgtgcat ... ttgtgagcagTGACAGACACAATTTACGAACAGAAACTCTGCATCAACAATATAAATTG
EST: gi|26047173|gb|CA784046.1|CA784046
EST:     ACCTGCTTGGGTGATCTGTACAGTGTTGCTTGGATGGAAGACAG                         TGACAGACACAATTTACGAACAGAAACTCTGCATCAACAATATAAATTG
genomic: ACCTGCTTGGGTGATCTGTACAGTGTTGCTTGGATGGAAGACAGgtatgtgcat ... ttgtgagcagTGACAGACACAATTTACGAACAGAAACTCTGCATCAACAATATAAATTG
EST: gi|120533615|gb|EH261748.1|EH261748
EST:     TATTCAACCTGCTTGGGTGATCTGTACAGTGTTGCTTGGATGGAAGACAG                         TGACAGACACAATTTACGAACAGAAACTCTGCATCAACAATATAAATTG
genomic: TATTCAACCTGCTTGGGTGATCTGTACAGTGTTGCTTGGATGGAAGACAGgtatgtgcat ... ttgtgagcagTGACAGACACAATTTACGAACAGAAACTCTGCATCAACAATATAAATTG
EST: gi|120493304|gb|EH221471.1|EH221471
EST:     TATTCAACCTGCTTGGGTGATCTGTACAGTGTTGCTTGGATGGAAGACAG                         TGACAGACACAATTTACGAACAGAAACTCTGCATCAACAATATAAATTG
genomic: TATTCAACCTGCTTGGGTGATCTGTACAGTGTTGCTTGGATGGAAGACAGgtatgtgcat ... ttgtgagcagTGACAGACACAATTTACGAACAGAAACTCTGCATCAACAATATAAATTG
EST: gi|254338257|gb|GR849782.1|GR849782
EST:     TATTCAACCTGCTTGGGTGATCTGTACAGTGTTGCTTGGATGGAAGACAG                         TGACAGACACAATTTACGAACAGAAACTCTGCATCAACAATATAAATTG
genomic: TATTCAACCTGCTTGGGTGATCTGTACAGTGTTGCTTGGATGGAAGACAGgtatgtgcat ... ttgtgagcagTGACAGACACAATTTACGAACAGAAACTCTGCATCAACAATATAAATTG
EST: gi|120491889|gb|EH220056.1|EH220056
EST:     TATTCAACCTGCTTGGGTGATCTGTACAGTGTTGCTTGGATGGAAGACAG                         TGACAGACACAATTTACGAACAGAAACTCTGCATCAACAATATAAATTG
genomic: TATTCAACCTGCTTGGGTGATCTGTACAGTGTTGCTTGGATGGAAGACAGgtatgtgcat ... ttgtgagcagTGACAGACACAATTTACGAACAGAAACTCTGCATCAACAATATAAATTG
EST: gi|120529964|gb|EH258098.1|EH258098
EST:     TATTCAACCTGCTTGGGTGATCTGTACAGTGTTGCTTGGATGGAAGACAG                         TGACAGACACAATTTACGAACAGAAACTCTGCATCAACAATATAAATTG
genomic: TATTCAACCTGCTTGGGTGATCTGTACAGTGTTGCTTGGATGGAAGACAGgtatgtgcat ... ttgtgagcagTGACAGACACAATTTACGAACAGAAACTCTGCATCAACAATATAAATTG
EST: gi|26048896|gb|CA785349.1|CA785349
EST:     TATTCAACCTGCTTGGGTGATCTGTACAGTGTTGCTTGGATGGAAGACAG                         TGACAGACACAATTTACGAACAGAAACTCTGCATCAACAATATAAATTG
genomic: TATTCAACCTGCTTGGGTGATCTGTACAGTGTTGCTTGGATGGAAGACAGgtatgtgcat ... ttgtgagcagTGACAGACACAATTTACGAACAGAAACTCTGCATCAACAATATAAATTG
EST: gi|120532682|gb|EH260815.1|EH260815
EST:     TATTCAACCTGCTTGGGTGATCTGTACAGTGTTGCTTGGATGGAAGACAG                         TGACAGACACAATTTACGAACAGAAACTCTGCATCAACAATATAAATTG
genomic: TATTCAACCTGCTTGGGTGATCTGTACAGTGTTGCTTGGATGGAAGACAGgtatgtgcat ... ttgtgagcagTGACAGACACAATTTACGAACAGAAACTCTGCATCAACAATATAAATTG
EST: gi|298164624|gb|HO014269.1|HO014269
EST:     TATTCAACCTGCTTGGGTGATCTGTACAGTGTTGCTTGGATGGAAGACAG                         TGACAGACACAATTTACGAACAGAAACTCTGCATCAACAATATAAATTG
genomic: TATTCAACCTGCTTGGGTGATCTGTACAGTGTTGCTTGGATGGAAGACAGgtatgtgcat ... ttgtgagcagTGACAGACACAATTTACGAACAGAAACTCTGCATCAACAATATAAATTG
EST: gi|22525336|gb|BU084147.1|BU084147
EST:     TATTCAACCTGCTTGGGTGATCTGTACAGTGTTGCTTGGATGGAAGACAG                         TGACAGACACAATTTACGAACAGAAACTCTGCATCAACAATATAAATTG
genomic: TATTCAACCTGCTTGGGTGATCTGTACAGTGTTGCTTGGATGGAAGACAGgtatgtgcat ... ttgtgagcagTGACAGACACAATTTACGAACAGAAACTCTGCATCAACAATATAAATTG
EST: gi|120532448|gb|EH260581.1|EH260581
EST:     TATTCAACCTGCTTGGGTGATCTGTACAGTGTTGCTTGGATGGAAGACAG                         TGACAGACACAATTTACGAACAGAAACTCTGCATCAACAATATAAATTG
genomic: TATTCAACCTGCTTGGGTGATCTGTACAGTGTTGCTTGGATGGAAGACAGgtatgtgcat ... ttgtgagcagTGACAGACACAATTTACGAACAGAAACTCTGCATCAACAATATAAATTG
EST: gi|120531033|gb|EH259166.1|EH259166
EST:     TACAGTGTTGCTTGGATGGAAGACAG                         TGACAGACACAATTTACGAACAGAAACTCTGCATCAACAATATAAATTG
genomic: TACAGTGTTGCTTGGATGGAAGACAGgtatgtgcat ... ttgtgagcagTGACAGACACAATTTACGAACAGAAACTCTGCATCAACAATATAAATTG
EST: gi|26047160|gb|CA784037.1|CA784037
EST:     CTTGGGTGATCTGTACAGTGTTGCTTGGATGGAAGACAG                         TGACAGACACAATTTACGAACAGAAACTCTGCATCAACAATATAAATTG
genomic: CTTGGGTGATCTGTACAGTGTTGCTTGGATGGAAGACAGgtatgtgcat ... ttgtgagcagTGACAGACACAATTTACGAACAGAAACTCTGCATCAACAATATAAATTG
EST: gi|10231540|gb|BE800428.1|BE800428
EST:     TATTCAACCTGCTTGGGTGATCTGTACAGTGTTGCTTGGATGGAAGACAG                         TGACAGACACAATTTACGAACAGAAACTCTGCATCAACAATATAAATTG
genomic: TATTCAACCTGCTTGGGTGATCTGTACAGTGTTGCTTGGATGGAAGACAGgtatgtgcat ... ttgtgagcagTGACAGACACAATTTACGAACAGAAACTCTGCATCAACAATATAAATTG
EST: gi|15662601|gb|BI699972.1|BI699972
EST:     TATTCAACCTGCTTGGGTGATCTGTACAGTGTTGCTTGGATGGAAGACAG                         TGACAGACACAATTTACGAACAGAAACTCTGCATCAACAATATAAATTG
genomic: TATTCAACCTGCTTGGGTGATCTGTACAGTGTTGCTTGGATGGAAGACAGgtatgtgcat ... ttgtgagcagTGACAGACACAATTTACGAACAGAAACTCTGCATCAACAATATAAATTG
EST: gi|120529568|gb|EH257702.1|EH257702
EST:     TATTCAACCTGCTTGGGTGATCTGTACAGTGTTGCTTGGATGGAAGACAG                         TGACAGACACAATTTACGAACAGAAACTCTGCATCAACAATATAAATTG
genomic: TATTCAACCTGCTTGGGTGATCTGTACAGTGTTGCTTGGATGGAAGACAGgtatgtgcat ... ttgtgagcagTGACAGACACAATTTACGAACAGAAACTCTGCATCAACAATATAAATTG
EST: gi|151413119|gb|EV282927.1|EV282927
EST:     TTGCTTGGATGGAAGACAG                         TGACAGACACAATTTACGAACAGAAACTCTGCATCAACAATATAAATTG
genomic: TTGCTTGGATGGAAGACAGgtatgtgcat ... ttgtgagcagTGACAGACACAATTTACGAACAGAAACTCTGCATCAACAATATAAATTG
EST: gi|9902841|gb|BE611809.1|BE611809
EST:     TATTCAACCTGCTTGGGTGATCTGTACAGTGTTGCTTGGATGGAAGACAG                         TGACAGACACAATTTACGAACAGAAACTCTGCATCAACAATATAAATTG
genomic: TATTCAACCTGCTTGGGTGATCTGTACAGTGTTGCTTGGATGGAAGACAGgtatgtgcat ... ttgtgagcagTGACAGACACAATTTACGAACAGAAACTCTGCATCAACAATATAAATTG
EST: gi|298192632|gb|HO033066.1|HO033066
EST:     GGATGGAAGACAG                         TGACAGACACAATTTACGAACAGAAACTCTGCATCAACAATATAAATTG
genomic: GGATGGAAGACAGgtatgtgcat ... ttgtgagcagTGACAGACACAATTTACGAACAGAAACTCTGCATCAACAATATAAATTG
EST: gi|10231712|gb|BE800600.1|BE800600
EST:     TATTCAACCTGCTTGGGTGATCTGTACAGTGTTGCTTGGATGGAAGACAG                         TGACAGACACAATTTACGAACAGAAACTCTGCATCAACAATATAAATTG
genomic: TATTCAACCTGCTTGGGTGATCTGTACAGTGTTGCTTGGATGGAAGACAGgtatgtgcat ... ttgtgagcagTGACAGACACAATTTACGAACAGAAACTCTGCATCAACAATATAAATTG
EST: gi|10232084|gb|BE800972.1|BE800972
EST:     TATTCAACCTGCTTGGGTGATCTGTACAGTGTTGCTTGGATGGAAGACAG                         TGACAGACACAATTTACGAACAGAAACTCTGCATCAACAATATAAATTG
genomic: TATTCAACCTGCTTGGGTGATCTGTACAGTGTTGCTTGGATGGAAGACAGgtatgtgcat ... ttgtgagcagTGACAGACACAATTTACGAACAGAAACTCTGCATCAACAATATAAATTG
EST: gi|120491705|gb|EH219872.1|EH219872
EST:     CAACCTGCTTGGGTGATCTGTACAGTGTTGCTTGGATGGAAGACAG                         TGACAGACACAATTTACGAACAGAAACTCTGCATCAACAATATAAATTG
genomic: CAACCTGCTTGGGTGATCTGTACAGTGTTGCTTGGATGGAAGACAGgtatgtgcat ... ttgtgagcagTGACAGACACAATTTACGAACAGAAACTCTGCATCAACAATATAAATTG
EST: gi|9986535|gb|BE660643.1|BE660643
EST:     TATTCAACCTGCTTGGGTGATCTGTACAGTGTTGCTTGGATGGAAGACAG                         TGACAGACACAATTTACGAACAGAAACTCTGCATCAACAATATAAATTG
genomic: TATTCAACCTGCTTGGGTGATCTGTACAGTGTTGCTTGGATGGAAGACAGgtatgtgcat ... ttgtgagcagTGACAGACACAATTTACGAACAGAAACTCTGCATCAACAATATAAATTG
EST: gi|15199399|gb|BI423811.1|BI423811
EST:     TATTCAACCTGCTTGGGTGATCTGTACAGTGTTGCTTGGATGGAAGACAG                         TGACAGACACGATTTACGAACAGAAACTCTGCATCAACAATATAAATTG
genomic: TATTCAACCTGCTTGGGTGATCTGTACAGTGTTGCTTGGATGGAAGACAGgtatgtgcat ... ttgtgagcagTGACAGACACAATTTACGAACAGAAACTCTGCATCAACAATATAAATTG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTAGTTGGGGAACATATTGCCCTGGGGAGTATCCTAGTCCTCCCCCAGAATATTCAACCTGCTTGGGTGATCTGTACAGTGTTGCTTGGATGGAAGACAGgtatgtgcataataagtaatcataaatgagatttatgtgaatatgtgatgatacttatatactcatgatccatgcaatcacaatggagtagttcaatgcc

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAAGA