Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACCTGGTGACACATCTACCGAAAGAACATTAAAAATTGAAGGGACCCCTGAACAAATTGAGTCTGCCAAACAAATGGTTAATCAAGTCATCAGTGGCGAGgtatgtttagtacccatcttgttttgttggatttggctttggtatagcttgttttgcttgccttgtgccaagtttagtttggtttatttgtttgattttg...

Basic information

species Glycine max
transcript GLYMA17G34850.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G34850.1 (Glycine max), 5'ss of exon 5
lower sequence: AT2G25970.1 (Arabidopsis thaliana), 5'ss of exon 5
ACCTGGTGACACATCTACCGAAAGAACATTAAAAATTGAAGGGACCCCTGAACAAATTGAGTCTGCCAAACAAATGGTTAATCAAGTCATCAGTGGCGAGgtatgtttagtacccatcttgttttgttggatttggctttggtatagcttgttttgcttgccttgtgccaagtttagtttggtttat--ttgtttgattttg
 ||||| ||| || |  | ||| | || ||  | ||||| ||||   | ||||| |||||   ||| |||||| | |||||| || ||||||||||||||||||||||  |     | ||  ||| | |  | || |   ||  |    ||| |   ||    |     || || |  |||  || |  ||   | |||| |
CCCTGGAGACCCAACGCCAGAACGGACTTTGCAGATTGATGGGATAACCGAACAGATTGAACATGCTAAACAATTAGTTAATGAAATCATCAGTGGCGAGgtatgtttgattgttgtgtttgtttatagattatgaca--ggcttctgctgtgtctatttttatacatgaatttgatattgtgttgtgattacattatttag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10847165|gb|BF069899.1|BF069899
EST:     AACAAATTGAGTCTGCCAAACAAATGGTTAATCAAGTCATCAGTGGCGAG                         AATCGTCAGAGAAATCCATCTATGTCTGGTGGTTATTCTCAGCAAGGTTAC
genomic: AACAAATTGAGTCTGCCAAACAAATGGTTAATCAAGTCATCAGTGGCGAGgtatgtttag ... ctttttgcagAATCGTCAGAGAAATCCATCTATGTCTGGTGGTTATTCTCAGCAAGGTTAC
EST: gi|23727993|gb|BU762039.1|BU762039
EST:     AACAAATTGAGTCTGCCAAACAAATGGTTAATCAAGTCATCAGTGGCGAG                         AATCGTCAGAGAAATCCATCTATGTCTGGTGGTTATTCTCAGCAAGGTTAC
genomic: AACAAATTGAGTCTGCCAAACAAATGGTTAATCAAGTCATCAGTGGCGAGgtatgtttag ... ctttttgcagAATCGTCAGAGAAATCCATCTATGTCTGGTGGTTATTCTCAGCAAGGTTAC
EST: gi|5760572|gb|AI965935.1|AI965935
EST:     AACAAATTGAGTCTGCCAAACAAATGGTTAATCAAGTCATCAGTGGCGAG                         AATCGTCAGAGAAATCCATCTATGTCTG
genomic: AACAAATTGAGTCTGCCAAACAAATGGTTAATCAAGTCATCAGTGGCGAGgtatgtttag ... ctttttgcagAATCGTCAGAGAAATCCATCTATGTCTG