1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...tttacttgtctatttgtttgtgtatctgttgcctgtatgtactgtcatcttgggtgagttcacttttttttatttgtggttacaatttttctttttgcagAATCGTCAGAGAAATCCATCTATGTCTGGTGGTTATTCTCAGCAAGGTTACCAAGCTAGGCCACCGACTAGCTGGGGTCCCCCTGCTGCTCCAATGCAAC
species | Glycine max |
transcript | GLYMA17G34850.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: AACAAATTGAGTCTGCCAAACAAATGGTTAATCAAGTCATCAGTGGCGAG AATCGTCAGAGAAATCCATCTATGTCTGGTGGTTATTCTCAGCAAGGTTACEST: gi|23727993|gb|BU762039.1|BU762039
genomic: AACAAATTGAGTCTGCCAAACAAATGGTTAATCAAGTCATCAGTGGCGAGgtatgtttag ... ctttttgcagAATCGTCAGAGAAATCCATCTATGTCTGGTGGTTATTCTCAGCAAGGTTAC
EST: AACAAATTGAGTCTGCCAAACAAATGGTTAATCAAGTCATCAGTGGCGAG AATCGTCAGAGAAATCCATCTATGTCTGGTGGTTATTCTCAGCAAGGTTACEST: gi|5760572|gb|AI965935.1|AI965935
genomic: AACAAATTGAGTCTGCCAAACAAATGGTTAATCAAGTCATCAGTGGCGAGgtatgtttag ... ctttttgcagAATCGTCAGAGAAATCCATCTATGTCTGGTGGTTATTCTCAGCAAGGTTAC
EST: AACAAATTGAGTCTGCCAAACAAATGGTTAATCAAGTCATCAGTGGCGAG AATCGTCAGAGAAATCCATCTATGTCTG
genomic: AACAAATTGAGTCTGCCAAACAAATGGTTAATCAAGTCATCAGTGGCGAGgtatgtttag ... ctttttgcagAATCGTCAGAGAAATCCATCTATGTCTG
catcttgggtgagttcacttttttttatttgtggttacaatttttctttttgcagAATCGTCAGAGAAATCCATCTATGTCTGGTGGTTATTCTCAGCAAGGTTACCAAGCTAGGCCACCGACTAGCTGGGGTCCCCCTGCTGCTCCAATGCAAC
tttttctttttgc CT-rich tract
ttttttttatttgtgg TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttacttgtctatttgtttgtgtatctgttgcctgtatgtactgtcatcttgggtgagttcacttttttttatttgtggttacaatttttctttttgcagAATCGTCAGAGAAATCCATCTATGTCTGGTGGTTATTCTCAGCAAGGTTACCAAGCTAGGCCACCGACTAGCTGGGGTCCCCCTGCTGCTCCAATGCAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - tgtttgt
- - - - - - - - - - - - -ctgttgc
- - - - - - - - - - - - - - - - ctgtatg
- - - - - - - - - - - - - - - - - - - -tactgtc
- - - - - - - - - - - - - - - - - - - - - - - - - -gggtgag