1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GGACGCTGATCCGAATTCGGCTACTAGGACTGTTGAGCTTATGGGTTCTCCTGATGCTATTGCCACAGCTGAGAAGCTCATCAACGAAGTTCTCGCTGAGgtattaccctgttgtttatatctttttgttgtggtagttttggtgatttggattttgatgagaaaatcaatggttgataatttgacgcattcatgatttg...
species | Glycine max |
transcript | GLYMA17G34850.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: CTGATGCTATTGCCACAGCTGAGAAGCTCATCAACGAAGTTCTCGCTGAG -CTGAAACTGGGAGGTTCTGGCATTGTTGCTCGACGAGTGGCTGGGCAAGCEST: gi|254319424|gb|GR830664.1|GR830664
genomic: CTGATGCTATTGCCACAGCTGAGAAGCTCATCAACGAAGTTCTCGCTGAGgtattaccct ... tttttaatagGCTGAAACTGG-AGGTTCTGGCATTGTTGCTCGACGAGTGGCTGGGCAAGC
EST: CTGATGCTATTGCCACAGCTGAGAAGCTCATCAACGAAGTTCTCGCTGAG GCTGAAACTGGAGGTTCTGGCATTGTTGCTCGACGAGTGGCTGGGCAAGCTEST: gi|254313678|gb|GR831307.1|GR831307
genomic: CTGATGCTATTGCCACAGCTGAGAAGCTCATCAACGAAGTTCTCGCTGAGgtattaccct ... tttttaatagGCTGAAACTGGAGGTTCTGGCATTGTTGCTCGACGAGTGGCTGGGCAAGCT
EST: CTGATGCTATTGCCACAGCTGAGAAGCTCATCAACGAAGTTCTCGCTGAG -CTGAAACTGGAGGTTCTGGCATTGTTGCTCGACGAGTGGCTGGGCAAGCTEST: gi|254338961|gb|GR847678.1|GR847678
genomic: CTGATGCTATTGCCACAGCTGAGAAGCTCATCAACGAAGTTCTCGCTGAGgtattaccct ... tttttaatagGCTGAAACTGGAGGTTCTGGCATTGTTGCTCGACGAGTGGCTGGGCAAGCT
EST: CTGATGCTATTGCCACAGCTGAGAAGCTCATCAACGAAGTTCTCGCTGAG GCTGAAACTGGAGGTTCTGGCATTGTTGCTCGACGAGTGGCTGGGCAAGCTEST: gi|23727993|gb|BU762039.1|BU762039
genomic: CTGATGCTATTGCCACAGCTGAGAAGCTCATCAACGAAGTTCTCGCTGAGgtattaccct ... tttttaatagGCTGAAACTGGAGGTTCTGGCATTGTTGCTCGACGAGTGGCTGGGCAAGCT
EST: GATGCTATTGCCACTGCTGAGAAGCTCATCAACGAAGTTCTCGCTGAG GCTGAAACTGGAGGTTCTGGCATTGTTGCTCGACGAGTGGCTGGGCAAGCTEST: gi|5760572|gb|AI965935.1|AI965935
genomic: GATGCTATTGCCACAGCTGAGAAGCTCATCAACGAAGTTCTCGCTGAGgtattaccct ... tttttaatagGCTGAAACTGGAGGTTCTGGCATTGTTGCTCGACGAGTGGCTGGGCAAGCT
EST: CTGATGCTATTGCCACAGCTGAGAAGCTCATCAACGAAGTTCTCGCTGAG GCTGAAACTGGAGGTTCTGGCATTGTTGCTCGACGAGTGGCTGGGCAAGCT
genomic: CTGATGCTATTGCCACAGCTGAGAAGCTCATCAACGAAGTTCTCGCTGAGgtattaccct ... tttttaatagGCTGAAACTGGAGGTTCTGGCATTGTTGCTCGACGAGTGGCTGGGCAAGCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGACGCTGATCCGAATTCGGCTACTAGGACTGTTGAGCTTATGGGTTCTCCTGATGCTATTGCCACAGCTGAGAAGCTCATCAACGAAGTTCTCGCTGAGgtattaccctgttgtttatatctttttgttgtggtagttttggtgatttggattttgatgagaaaatcaatggttgataatttgacgcattcatgatttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA