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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTGAAACTGGAGGTTCTGGCATTGTTGCTCGACGAGTGGCTGGGCAAGCTGGGTCTGATGAGTATGTGTCGAAGATCCCAAATAACAAGgtgtgctaaggggttgtgtataaacatatgacttatgtgatgtatttagtgttttaattctgtttgggtttgttttggctgggatggtttaccgttattttctgcag

Basic information

species Glycine max
transcript GLYMA17G34850.1
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193484775|gb|FK449927.1|FK449927
EST:     GGGTACTGATGAGTATGTGTCGAAGATCCCAAATAACAAG                         GTTGGTCTTGTAATTGGTAAAGGTGGAGAAACAATAAAGAATATGCAAGCT
genomic: GGGT-CTGATGAGTATGTGTCGAAGATCCCAAATAACAAGgtgtgctaag ... ttttctgcagGTTGGTCTTGTAATTGGTAAAGGTGGAGAAACAATAAAGAATATGCAAGCT
EST: gi|193614465|gb|FK563217.1|FK563217
EST:     GCTGGGTCTGATGAGTATGTGTCGAAGATCCCAAATAACAAG                         GTTGGTCTTGTAATTGGTAAAGGTGGAGAAACAATAAAGAATATGCAAGCT
genomic: GCTGGGTCTGATGAGTATGTGTCGAAGATCCCAAATAACAAGgtgtgctaag ... ttttctgcagGTTGGTCTTGTAATTGGTAAAGGTGGAGAAACAATAAAGAATATGCAAGCT
EST: gi|10847165|gb|BF069899.1|BF069899
EST:     GTATGTGTCGAAGATCCCAAATAACAAG                         GTTGGTCTTGTAATTGGTAAAGGTGGAGAAACAATAAAGAATATGCAAGCT
genomic: GTATGTGTCGAAGATCCCAAATAACAAGgtgtgctaag ... ttttctgcagGTTGGTCTTGTAATTGGTAAAGGTGGAGAAACAATAAAGAATATGCAAGCT
EST: gi|208168050|gb|GD970784.1|GD970784
EST:     GGGTCTGATTGAGTATGTGTCGAAGATCCCAAATAACAAG                         GTTGGTCTTGTAATTGGTAAAGGTGGAGAAACAATAAAGAATATGCAAGCT
genomic: GGGTCTGA-TGAGTATGTGTCGAAGATCCCAAATAACAAGgtgtgctaag ... ttttctgcagGTTGGTCTTGTAATTGGTAAAGGTGGAGAAACAATAAAGAATATGCAAGCT
EST: gi|193696861|gb|FK638451.1|FK638451
EST:     GCTGGGTCTGATGAGTATGTGTCGAAGATCCCAAAATAACAAG                         GTTGGTCTTGTAATTGGTAAAGGTGGAGAAACAATAAAGAATATGCAAGCT
genomic: GCTGGGTCTGATGAGTATGTGTCGAAGATCCC-AAATAACAAGgtgtgctaag ... ttttctgcagGTTGGTCTTGTAATTGGTAAAGGTGGAGAAACAATAAAGAATATGCAAGCT
EST: gi|254319424|gb|GR830664.1|GR830664
EST:     CTGGGCAAGCTGGGTCTGATGAGTATGTGTCGAAGATCCCAAATAACAAG                         GTTGGTCTTGTAATTGGTAAAGGTGGAGAAACAATAAAGAATATGCAAGCT
genomic: CTGGGCAAGCTGGGTCTGATGAGTATGTGTCGAAGATCCCAAATAACAAGgtgtgctaag ... ttttctgcagGTTGGTCTTGTAATTGGTAAAGGTGGAGAAACAATAAAGAATATGCAAGCT
EST: gi|193575013|gb|FK530656.1|FK530656
EST:     GCTGGGTCTGATGAGTATGTGTCGAAGATCCCAAATAACAAG                         GTTGGTCTTGTAATTGGTAAAGGTGGAGAAACAATAAAGAATATGCAAGCT
genomic: GCTGGGTCTGATGAGTATGTGTCGAAGATCCCAAATAACAAGgtgtgctaag ... ttttctgcagGTTGGTCTTGTAATTGGTAAAGGTGGAGAAACAATAAAGAATATGCAAGCT
EST: gi|193660806|gb|FK602134.1|FK602134
EST:     GCTGGGTCTGATGAGTATGTGTCGAAGATCCCAAATAACAAG                         GTTGGTCTTGTAATTGGTAAAGGTGGAGAAACAATAAAGAATATGCAAGCT
genomic: GCTGGGTCTGATGAGTATGTGTCGAAGATCCCAAATAACAAGgtgtgctaag ... ttttctgcagGTTGGTCTTGTAATTGGTAAAGGTGGAGAAACAATAAAGAATATGCAAGCT
EST: gi|193373474|gb|FK340246.1|FK340246
EST:     TCTGATGAGTATGTGTCGAAGATCCCAAATAACAAG                         GTTGGTCTTGTAATTGGTAAAGGTGGAGAAACAATAAAGAATATGCAAGCT
genomic: TCTGATGAGTATGTGTCGAAGATCCCAAATAACAAGgtgtgctaag ... ttttctgcagGTTGGTCTTGTAATTGGTAAAGGTGGAGAAACAATAAAGAATATGCAAGCT
EST: gi|23727993|gb|BU762039.1|BU762039
EST:     CTGGGCAAGCTGGGTCTGACGAGTATGTGTCGAAGATCCCAAATAACAAG                         GTTGGTCTTGTAATTGGTAAAGGTGGAGAAACAATAAAGAATATGCAAGCT
genomic: CTGGGCAAGCTGGGTCTGATGAGTATGTGTCGAAGATCCCAAATAACAAGgtgtgctaag ... ttttctgcagGTTGGTCTTGTAATTGGTAAAGGTGGAGAAACAATAAAGAATATGCAAGCT
EST: gi|5760572|gb|AI965935.1|AI965935
EST:     CTGGGCAAGCTGGGTCTGATGAGTATGTGTCGAAGATCCCAAATAACAAG                         GTTGGACTTGTAATTGGTAAAGGTGGAGAAACAATAAAGAATATGCAAGCT
genomic: CTGGGCAAGCTGGGTCTGATGAGTATGTGTCGAAGATCCCAAATAACAAGgtgtgctaag ... ttttctgcagGTTGGTCTTGTAATTGGTAAAGGTGGAGAAACAATAAAGAATATGCAAGCT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GCTGAAACTGGAGGTTCTGGCATTGTTGCTCGACGAGTGGCTGGGCAAGCTGGGTCTGATGAGTATGTGTCGAAGATCCCAAATAACAAGgtgtgctaaggggttgtgtataaacatatgacttatgtgatgtatttagtgttttaattctgtttgggtttgttttggctgggatggtttaccgttattttctgcag

- - - - - - - - - - - - - - - - - - - - - -  CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA