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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttccctctttaatattattgtcctcatttcagtgttcctttaataatggatgctaaattcttttgatcattattttcatatgactttccattactttgtgattactatgttgttgacttcccatgtattattgtcgttcatcatgtattgtttgtcttttcagGTGATTCCTCTTCATCTTCCACCTGGTGACACATCTACCGAAAGAACATTAAAAATTGAAGGGACCCCTGAACAAATTGAGTCTGCCAAACAAATGGTTA

Basic information

species Glycine max
transcript GLYMA17G34850.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193484775|gb|FK449927.1|FK449927
EST:     GTGGAGAAACAATAAAGAATATGCAAGCTTCAACTGGAGCAAGAATTCAG                         GTGATTCCTCTTCATCTTCCACCTGGTGACACATCTACCGAAAGAACATTA
genomic: GTGGAGAAACAATAAAGAATATGCAAGCTTCAACTGGAGCAAGAATTCAGgtttccctct ... gtcttttcagGTGATTCCTCTTCATCTTCCACCTGGTGACACATCTACCGAAAGAACATTA
EST: gi|193614465|gb|FK563217.1|FK563217
EST:     GTGGAGAAACAATAAAGAATATGCAAGCTTCAACTGGAGCAAGAATTCAG                         GTGATTCCTCTTCATCTTCCACCTGGTGACACATCTACCGAAAGAACATTA
genomic: GTGGAGAAACAATAAAGAATATGCAAGCTTCAACTGGAGCAAGAATTCAGgtttccctct ... gtcttttcagGTGATTCCTCTTCATCTTCCACCTGGTGACACATCTACCGAAAGAACATTA
EST: gi|10847165|gb|BF069899.1|BF069899
EST:     GTGGAGAAACAATAAAGAATATGCAAGCTTCAACTGGAGCAAGAATTCAG                         GTGATTCCTCTTCATCTTCCACCAGGTGACACATCTACCGAAAGAACATTA
genomic: GTGGAGAAACAATAAAGAATATGCAAGCTTCAACTGGAGCAAGAATTCAGgtttccctct ... gtcttttcagGTGATTCCTCTTCATCTTCCACCTGGTGACACATCTACCGAAAGAACATTA
EST: gi|208168050|gb|GD970784.1|GD970784
EST:     GTGGAGAAACAATAAAGAATATGCAAGCTTCAACTGGAGCAAGAATTCAG                         GTGATTCCTCTTCATCTTCCACCTGGTGACACATCTACCG
genomic: GTGGAGAAACAATAAAGAATATGCAAGCTTCAACTGGAGCAAGAATTCAGgtttccctct ... gtcttttcagGTGATTCCTCTTCATCTTCCACCTGGTGACACATCTACCG
EST: gi|193696861|gb|FK638451.1|FK638451
EST:     GTGGAGAAACAATAAAGAATATGCAAGCTTCAACTGGAGCAAGAATTCAG                         GTGATTCCTCTTCATCTTCCACCTGGTGACACATCTACCGAAAGAACATTA
genomic: GTGGAGAAACAATAAAGAATATGCAAGCTTCAACTGGAGCAAGAATTCAGgtttccctct ... gtcttttcagGTGATTCCTCTTCATCTTCCACCTGGTGACACATCTACCGAAAGAACATTA
EST: gi|254319424|gb|GR830664.1|GR830664
EST:     GTGGAGAAACAATAAAGAATATGCAAGCTTCAACTGGAGCAAGAATTCAG                         -TGATTCCTCTTCATCTTCCACCTGGTGACACATCTACCGAAAGAACATTA
genomic: GTGGAGAAACAATAAAGAATATGCAAGCTTCAACTGGAGCAAGAATTCAGgtttccctct ... gtcttttcagGTGATTCCTCTTCATCTTCCACCTGGTGACACATCTACCGAAAGAACATTA
EST: gi|193575013|gb|FK530656.1|FK530656
EST:     GTGGAGAAACAATAAAGAATATGCAAGCTTCAACTGGAGCAAGAATTCAG                         GTGATTCCTCTTCATCTTCCACCTGGTGACACATCTA
genomic: GTGGAGAAACAATAAAGAATATGCAAGCTTCAACTGGAGCAAGAATTCAGgtttccctct ... gtcttttcagGTGATTCCTCTTCATCTTCCACCTGGTGACACATCTA
EST: gi|193660806|gb|FK602134.1|FK602134
EST:     GTGGAGAAACAATAAAGAATATGCAAGCTTCAACTGGAGCAAGAATTCAG                         GTGATTCCTCTTCATCTTCCACCTGGTGACACATCTACCGAAAGAACATTA
genomic: GTGGAGAAACAATAAAGAATATGCAAGCTTCAACTGGAGCAAGAATTCAGgtttccctct ... gtcttttcagGTGATTCCTCTTCATCTTCCACCTGGTGACACATCTACCGAAAGAACATTA
EST: gi|193373474|gb|FK340246.1|FK340246
EST:     GTGGAGAAACAATAAAGAATATGCAAGCTTCAACTGGAGCAAGAATTCAG                         GTGATTCCTCTTCATCTTCCACCTGGTGACACATCTACC
genomic: GTGGAGAAACAATAAAGAATATGCAAGCTTCAACTGGAGCAAGAATTCAGgtttccctct ... gtcttttcagGTGATTCCTCTTCATCTTCCACCTGGTGACACATCTACC
EST: gi|23727993|gb|BU762039.1|BU762039
EST:     GTGGAGAAACAATAAAGAATATGCAAGCTTCTTTTGTATTAAGAATTCAG                         GTGATTCCTCTTCATCTTCCACCAGGTGACACATCTACCGAAAGAACATTA
genomic: GTGGAGAAACAATAAAGAATATGCAAGCTTCAACTGGAGCAAGAATTCAGgtttccctct ... gtcttttcagGTGATTCCTCTTCATCTTCCACCTGGTGACACATCTACCGAAAGAACATTA
EST: gi|5760572|gb|AI965935.1|AI965935
EST:     GTGGAGAAACAATAAAGAATATGCAAGCTTCAACTGGAGCAAGAATTCAG                         GTGATTCCTCTTCATCTTCCACCTGGTGACACATCTACCGAAAGAACATTA
genomic: GTGGAGAAACAATAAAGAATATGCAAGCTTCAACTGGAGCAAGAATTCAGgtttccctct ... gtcttttcagGTGATTCCTCTTCATCTTCCACCTGGTGACACATCTACCGAAAGAACATTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttgttgacttcccatgtattattgtcgttcatcatgtattgtttgtcttttcagGTGATTCCTCTTCATCTTCCACCTGGTGACACATCTACCGAAAGAACATTAAAAATTGAAGGGACCCCTGAACAAATTGAGTCTGCCAAACAAATGGTTA
  tgttgac  putative branch site (score: 3)
                                       ttgtttgtcttttc  putative PPT
              atgtattatt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtttccctctttaatattattgtcctcatttcagtgttcctttaataatggatgctaaattcttttgatcattattttcatatgactttccattactttgtgattactatgttgttgacttcccatgtattattgtcgttcatcatgtattgtttgtcttttcagGTGATTCCTCTTCATCTTCCACCTGGTGACACATCTACCGAAAGAACATTAAAAATTGAAGGGACCCCTGAACAAATTGAGTCTGCCAAACAAATGGTTA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG