1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...gagcttttaaaaattaagtgcttaattttgaatattagttaagtacacgcatagttagggttttgttgctcatttgctgtgtttttttttttttttgcagATGTGAAGGGTCCATACTCGGTGCCGTCGATTTCGCCGTCCGCGGTGTCATACTCGTACCAGGGTGGTGGTGCGAGCAAGAAGATTGACATTCCCAATGG
species | Glycine max |
transcript | GLYMA17G34850.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CACCAAACGCCCCAAGCACGACAACAACGGCTCCTCCTTCGACTCCATCG ATGTGAAGGGTCCATACTCGGTGCCGTCGATTTCGCCGTCCGCGGTGTCATEST: gi|5605995|gb|AI900093.1|AI900093
genomic: CACCAAACGCCCCAAGCACGACAACAACGGCTCCTCCTTCGACTCCATCGgttagggttt ... ttttttgcagATGTGAAGGGTCCATACTCGGTGCCGTCGATTTCGCCGTCCGCGGTGTCAT
EST: CACCAAACGCCCCAAGCACGACAACAACGGCTCCTCCTTCGACTCCATCG ATGTGAAGGGTCCATACTCGGTGCCGTCGATTTCGCCGTCCGCGGTGTCATEST: gi|16996836|gb|BM086208.1|BM086208
genomic: CACCAAACGCCCCAAGCACGACAACAACGGCTCCTCCTTCGACTCCATCGgttagggttt ... ttttttgcagATGTGAAGGGTCCATACTCGGTGCCGTCGATTTCGCCGTCCGCGGTGTCAT
EST: CACCAAACGCCCCAAGCACGACAACAACGGCTCCTCCTTCGACTCCATCG ATGTGAAGGGTCCATACTCGGTGCCGTCGATTTCGCCGTCCGCGGTGTCATEST: gi|254319424|gb|GR830664.1|GR830664
genomic: CACCAAACGCCCCAAGCACGACAACAACGGCTCCTCCTTCGACTCCATCGgttagggttt ... ttttttgcagATGTGAAGGGTCCATACTCGGTGCCGTCGATTTCGCCGTCCGCGGTGTCAT
EST: AACGGCTCCTCCTTCGACTCCATCG ATGTGAAGGGTCCATACTCGGTGCCGTCGATTTCGCCGTCCGCGGTGTCATEST: gi|254313678|gb|GR831307.1|GR831307
genomic: AACGGCTCCTCCTTCGACTCCATCGgttagggttt ... ttttttgcagATGTGAAGGGTCCATACTCGGTGCCGTCGATTTCGCCGTCCGCGGTGTCAT
EST: CACCAAACGCCCCAAGCACGACAACAACGGCTCCTCCTTCGACTCCATCG ATGTGAAGGGTCCATACTCGGTGCCGTCGATTTCGCCGTCCGCGGTGTCATEST: gi|254338961|gb|GR847678.1|GR847678
genomic: CACCAAACGCCCCAAGCACGACAACAACGGCTCCTCCTTCGACTCCATCGgttagggttt ... ttttttgcagATGTGAAGGGTCCATACTCGGTGCCGTCGATTTCGCCGTCCGCGGTGTCAT
EST: CACCAAACGCCCCAAGCACGACAACAACGGCTCCTCCTTCGACTCCATCG ATGTGAAGGGTCCATACTCGGTGCCGTCGATTTCGCCGTCCGCGGTGTCAT
genomic: CACCAAACGCCCCAAGCACGACAACAACGGCTCCTCCTTCGACTCCATCGgttagggttt ... ttttttgcagATGTGAAGGGTCCATACTCGGTGCCGTCGATTTCGCCGTCCGCGGTGTCAT
cacgcatagttagggttttgttgctcatttgctgtgtttttttttttttttgcagATGTGAAGGGTCCATACTCGGTGCCGTCGATTTCGCCGTCCGCGGTGTCATACTCGTACCAGGGTGGTGGTGCGAGCAAGAAGATTGACATTCCCAATGG
ctcatttgctgtgttt CT-rich tract
tgtgtttttttttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gagcttttaaaaattaagtgcttaattttgaatattagttaagtacacgcatagttagggttttgttgctcatttgctgtgtttttttttttttttgcagATGTGAAGGGTCCATACTCGGTGCCGTCGATTTCGCCGTCCGCGGTGTCATACTCGTACCAGGGTGGTGGTGCGAGCAAGAAGATTGACATTCCCAATGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - -aaaattaa
- - - - - - - - -gtgctta
- - - - - - - - - - - - - - - - - - - - - -tacacgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgttgct