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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTACACTCCTATTTCAGATCCAGAATCAAATGGCTATTTTGATTTGCTAATCAAGgtgtgtgaccattatggaggcattacttttcacatcttgttgatcatctagcctaccattttaaagaggcaattgggtgatccacttttcaaattgttgcag

Basic information

species Glycine max
transcript GLYMA17G12530.1
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209717393|gb|BW659069.1|BW659069
EST:     CTCCTATTTCAGATCCAGAATCAAATGGCTATTTTGATTTGCTAATCAAG                         GTATATCCTGAAGGGAAAATGAGCCAGCATTTTGCAAGCTTAAAACCGGGT
genomic: CTCCTATTTCAGATCCAGAATCAAATGGCTATTTTGATTTGCTAATCAAGgtgtgtgacc ... attgttgcagGTATATCCTGAAGGGAAAATGAGCCAGCATTTTGCAAGCTTAAAACCGGGT
EST: gi|11414158|gb|BF426169.1|BF426169
EST:     CTCCTATTTCAGATCCAGAATCAAATGGCTATTTTGATTTGCTAATCAAG                         GTATATCCTGAAGGGAAAATGAGCCAGCATTTTGCAAGCTTAAAACCGGGT
genomic: CTCCTATTTCAGATCCAGAATCAAATGGCTATTTTGATTTGCTAATCAAGgtgtgtgacc ... attgttgcagGTATATCCTGAAGGGAAAATGAGCCAGCATTTTGCAAGCTTAAAACCGGGT
EST: gi|254335317|gb|GR846814.1|GR846814
EST:     CTCCTATTTCAGATCCAGAATCAAATGGCTATTTTGATTTGCTAATCAAG                         GTATATCCTGAAGGGAAAATGAGCCAGCATTTTGCAAGCTTAAAACCGGGT
genomic: CTCCTATTTCAGATCCAGAATCAAATGGCTATTTTGATTTGCTAATCAAGgtgtgtgacc ... attgttgcagGTATATCCTGAAGGGAAAATGAGCCAGCATTTTGCAAGCTTAAAACCGGGT
EST: gi|192309123|gb|FG999070.1|FG999070
EST:     CTCCTATTTCAGATCCAGAATCAAATGGCTATTTTGATTTGCTAATCAAG                         GTATATCCTGAAGGGAAAATGAGCCAGCATTTTGCAAGCTTAAAACCGGGT
genomic: CTCCTATTTCAGATCCAGAATCAAATGGCTATTTTGATTTGCTAATCAAGgtgtgtgacc ... attgttgcagGTATATCCTGAAGGGAAAATGAGCCAGCATTTTGCAAGCTTAAAACCGGGT
EST: gi|254335318|gb|GR846815.1|GR846815
EST:     CTATTTCAGAT-CAGAATCAAATGGCTATTTTTGA-TTGCTAATCAAG                         GTATAT-CTGAAGGGAAAATGAGCCAGCATTTTGCAAGCTTAAAACCGGGT
genomic: CTATTTCAGATCCAGAATCAAATGGCTA-TTTTGATTTGCTAATCAAGgtgtgtgacc ... attgttgcagGTATATCCTGAAGGGAAAATGAGCCAGCATTTTGCAAGCTTAAAACCGGGT
EST: gi|7588554|gb|AW704277.1|AW704277
EST:     CTCCTATTTCAGATCCAGAATCAAATGGCTATTTTGATTTGCTAATCAAG                         GTATATCCTGAAGGGAAAATGAGCCAGCATTTTGCAAGCTTAAAAACCGG-
genomic: CTCCTATTTCAGATCCAGAATCAAATGGCTATTTTGATTTGCTAATCAAGgtgtgtgacc ... attgttgcagGTATATCCTGAAGGGAAAATGAGCCAGCATTTTGCAAGCTTAAAA-CCGGG
EST: gi|6071914|gb|AW101301.1|AW101301
EST:     TGCTAATCAAG                         GTATATCCTGAAGGGAAAATGAGCCAGCATTTTGCAAGCTTAAAACCGGGT
genomic: TGCTAATCAAGgtgtgtgacc ... attgttgcagGTATATCCTGAAGGGAAAATGAGCCAGCATTTTGCAAGCTTAAAACCGGGT