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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttggaattaatttatggtgtctgattttatctcctggatccctgtactgatgcaccttatcgttgatttgctgcagGTTTCTGGCATCCTAAAAGAGGCTGGATACACTGAACAAATGGTATACAAATTCTGAGAAATTTAGTTTTCTTGCATCTGAATTCCAAGCACTTGTCCGC

Basic information

species Glycine max
transcript GLYMA17G12530.1
intron # 12
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193659406|gb|FK601187.1|FK601187
EST:     TGATGAAAGCAATATCTGGAGAAAAGGCCAAGGACTGGACACAAGGAGAG                         GTTTCTGGCATCCTAAAAGAGGCTGGATACACTGAACAAATGGTATACAAA
genomic: TGATGAAAGCAATATCTGGAGAAAAGGCCAAGGACTGGACACAAGGAGAGgtttggaatt ... tttgctgcagGTTTCTGGCATCCTAAAAGAGGCTGGATACACTGAACAAATGGTATACAAA
EST: gi|208066403|gb|GD861764.1|GD861764
EST:     ATTGTAAAGCAATATCTGGAGAAAAGGCCAAGGACTGGACACAAGGAGAG                         GTTTCTGGCATCCTAAAAGAGGCTGGATACACTGAACAAATGGTATACAAA
genomic: A-TG-AAAGCAATATCTGGAGAAAAGGCCAAGGACTGGACACAAGGAGAGgtttggaatt ... tttgctgcagGTTTCTGGCATCCTAAAAGAGGCTGGATACACTGAACAAATGGTATACAAA
EST: gi|207779126|gb|GD754156.1|GD754156
EST:     TGANGAAAGCAATATCTGGAGAAAAGGCCAAGGACTGGACACAAGGAGAG                         GTTTCTGGCATCCTAAAAGAGGCTGGATACACTGAACAAATGGTATACAAA
genomic: TGATGAAAGCAATATCTGGAGAAAAGGCCAAGGACTGGACACAAGGAGAGgtttggaatt ... tttgctgcagGTTTCTGGCATCCTAAAAGAGGCTGGATACACTGAACAAATGGTATACAAA
EST: gi|13790600|gb|BG653191.1|BG653191
EST:     TGATGAAAGCAATATCTGGAGAAAAGGCCAAGGACTGGACACAAGGAGAG                         GTTTCTGGCATCCTAAAAGAGGCTGGATACACTGAACAAATGGTATACAAA
genomic: TGATGAAAGCAATATCTGGAGAAAAGGCCAAGGACTGGACACAAGGAGAGgtttggaatt ... tttgctgcagGTTTCTGGCATCCTAAAAGAGGCTGGATACACTGAACAAATGGTATACAAA
EST: gi|254335318|gb|GR846815.1|GR846815
EST:     TGATGAAAGCAATATCTGGAGAAAAGGCCAAGGACTGGACACAAGGAGAG                         GTTTCTGGCATCCTAAAAGAGGCTGGATACACTGAACAAATGGTATACAAA
genomic: TGATGAAAGCAATATCTGGAGAAAAGGCCAAGGACTGGACACAAGGAGAGgtttggaatt ... tttgctgcagGTTTCTGGCATCCTAAAAGAGGCTGGATACACTGAACAAATGGTATACAAA
EST: gi|209717394|gb|BW659070.1|BW659070
EST:     TGATGAAAGCAATATCTGGAGAAAAGGCCAAGGACTGGACACAAGGAGAG                         GTTTCTGGCATCCTAAAAGAGGCTGGATACACTGAACAAATGGTATACAAA
genomic: TGATGAAAGCAATATCTGGAGAAAAGGCCAAGGACTGGACACAAGGAGAGgtttggaatt ... tttgctgcagGTTTCTGGCATCCTAAAAGAGGCTGGATACACTGAACAAATGGTATACAAA
EST: gi|207829211|gb|GD798915.1|GD798915
EST:     TGATGAAAGCAATATCTGGAGAAAAGGCCAAGGACTGGACACAAGGAGAG                         GTTTCTGGCATCCTAAAAGAGGCTGGATACACTGAACAAATGGTATACAAA
genomic: TGATGAAAGCAATATCTGGAGAAAAGGCCAAGGACTGGACACAAGGAGAGgtttggaatt ... tttgctgcagGTTTCTGGCATCCTAAAAGAGGCTGGATACACTGAACAAATGGTATACAAA
EST: gi|208141669|gb|GD939525.1|GD939525
EST:     TGATGAAAGCAATATCTGGAGAAAAGGCCAAGGACTGGACACAAGGAGAG                         GTTTCTGGCATCCTAAAAGAGGCTGGATACACTGAACAAATGGTATACAAA
genomic: TGATGAAAGCAATATCTGGAGAAAAGGCCAAGGACTGGACACAAGGAGAGgtttggaatt ... tttgctgcagGTTTCTGGCATCCTAAAAGAGGCTGGATACACTGAACAAATGGTATACAAA
EST: gi|214009286|gb|DB989918.1|DB989918
EST:     TGATGAAAGCAATATCTGGAGAAAAGGCCAAGGACTGGACACAAGGAGAG                         GTTTCTGGCATCCTAAAAGAGGCTGGATACACTGAACAAATGGTATACAAA
genomic: TGATGAAAGCAATATCTGGAGAAAAGGCCAAGGACTGGACACAAGGAGAGgtttggaatt ... tttgctgcagGTTTCTGGCATCCTAAAAGAGGCTGGATACACTGAACAAATGGTATACAAA
EST: gi|16343984|gb|BI969579.1|BI969579
EST:     TGATGAAAGCAATATCTGGAGAAAAGGCCAAGGACTGGACACAAGGAGAG                         GTTTTTGGCATCCTAAAAGAGGCTGGATACACTGAACAAATGGTATACAAA
genomic: TGATGAAAGCAATATCTGGAGAAAAGGCCAAGGACTGGACACAAGGAGAGgtttggaatt ... tttgctgcagGTTTCTGGCATCCTAAAAGAGGCTGGATACACTGAACAAATGGTATACAAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgattttatctcctggatccctgtactgatgcaccttatcgttgatttgctgcagGTTTCTGGCATCCTAAAAGAGGCTGGATACACTGAACAAATGGTATACAAATTCTGAGAAATTTAGTTTTCTTGCATCTGAATTCCAAGCACTTGTCCGC
                                         ttgattt  TA-rich tract