1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
GTGTGTGGACCCCCGGGTATGATGAAAGCAATATCTGGAGAAAAGGCCAAGGACTGGACACAAGGAGAGgtttggaattaatttatggtgtctgattttatctcctggatccctgtactgatgcaccttatcgttgatttgctgcag
species | Glycine max |
transcript | GLYMA17G12530.1 |
intron # | 12 |
splice site | 5' |
intron type | U2 |
EST: TGATGAAAGCAATATCTGGAGAAAAGGCCAAGGACTGGACACAAGGAGAG GTTTCTGGCATCCTAAAAGAGGCTGGATACACTGAACAAATGGTATACAAAEST: gi|208066403|gb|GD861764.1|GD861764
genomic: TGATGAAAGCAATATCTGGAGAAAAGGCCAAGGACTGGACACAAGGAGAGgtttggaatt ... tttgctgcagGTTTCTGGCATCCTAAAAGAGGCTGGATACACTGAACAAATGGTATACAAA
EST: ATTGTAAAGCAATATCTGGAGAAAAGGCCAAGGACTGGACACAAGGAGAG GTTTCTGGCATCCTAAAAGAGGCTGGATACACTGAACAAATGGTATACAAAEST: gi|207779126|gb|GD754156.1|GD754156
genomic: A-TG-AAAGCAATATCTGGAGAAAAGGCCAAGGACTGGACACAAGGAGAGgtttggaatt ... tttgctgcagGTTTCTGGCATCCTAAAAGAGGCTGGATACACTGAACAAATGGTATACAAA
EST: TGANGAAAGCAATATCTGGAGAAAAGGCCAAGGACTGGACACAAGGAGAG GTTTCTGGCATCCTAAAAGAGGCTGGATACACTGAACAAATGGTATACAAAEST: gi|13790600|gb|BG653191.1|BG653191
genomic: TGATGAAAGCAATATCTGGAGAAAAGGCCAAGGACTGGACACAAGGAGAGgtttggaatt ... tttgctgcagGTTTCTGGCATCCTAAAAGAGGCTGGATACACTGAACAAATGGTATACAAA
EST: TGATGAAAGCAATATCTGGAGAAAAGGCCAAGGACTGGACACAAGGAGAG GTTTCTGGCATCCTAAAAGAGGCTGGATACACTGAACAAATGGTATACAAAEST: gi|254335318|gb|GR846815.1|GR846815
genomic: TGATGAAAGCAATATCTGGAGAAAAGGCCAAGGACTGGACACAAGGAGAGgtttggaatt ... tttgctgcagGTTTCTGGCATCCTAAAAGAGGCTGGATACACTGAACAAATGGTATACAAA
EST: TGATGAAAGCAATATCTGGAGAAAAGGCCAAGGACTGGACACAAGGAGAG GTTTCTGGCATCCTAAAAGAGGCTGGATACACTGAACAAATGGTATACAAAEST: gi|209717394|gb|BW659070.1|BW659070
genomic: TGATGAAAGCAATATCTGGAGAAAAGGCCAAGGACTGGACACAAGGAGAGgtttggaatt ... tttgctgcagGTTTCTGGCATCCTAAAAGAGGCTGGATACACTGAACAAATGGTATACAAA
EST: TGATGAAAGCAATATCTGGAGAAAAGGCCAAGGACTGGACACAAGGAGAG GTTTCTGGCATCCTAAAAGAGGCTGGATACACTGAACAAATGGTATACAAAEST: gi|207829211|gb|GD798915.1|GD798915
genomic: TGATGAAAGCAATATCTGGAGAAAAGGCCAAGGACTGGACACAAGGAGAGgtttggaatt ... tttgctgcagGTTTCTGGCATCCTAAAAGAGGCTGGATACACTGAACAAATGGTATACAAA
EST: TGATGAAAGCAATATCTGGAGAAAAGGCCAAGGACTGGACACAAGGAGAG GTTTCTGGCATCCTAAAAGAGGCTGGATACACTGAACAAATGGTATACAAAEST: gi|208141669|gb|GD939525.1|GD939525
genomic: TGATGAAAGCAATATCTGGAGAAAAGGCCAAGGACTGGACACAAGGAGAGgtttggaatt ... tttgctgcagGTTTCTGGCATCCTAAAAGAGGCTGGATACACTGAACAAATGGTATACAAA
EST: TGATGAAAGCAATATCTGGAGAAAAGGCCAAGGACTGGACACAAGGAGAG GTTTCTGGCATCCTAAAAGAGGCTGGATACACTGAACAAATGGTATACAAAEST: gi|214009286|gb|DB989918.1|DB989918
genomic: TGATGAAAGCAATATCTGGAGAAAAGGCCAAGGACTGGACACAAGGAGAGgtttggaatt ... tttgctgcagGTTTCTGGCATCCTAAAAGAGGCTGGATACACTGAACAAATGGTATACAAA
EST: TGATGAAAGCAATATCTGGAGAAAAGGCCAAGGACTGGACACAAGGAGAG GTTTCTGGCATCCTAAAAGAGGCTGGATACACTGAACAAATGGTATACAAAEST: gi|16343984|gb|BI969579.1|BI969579
genomic: TGATGAAAGCAATATCTGGAGAAAAGGCCAAGGACTGGACACAAGGAGAGgtttggaatt ... tttgctgcagGTTTCTGGCATCCTAAAAGAGGCTGGATACACTGAACAAATGGTATACAAA
EST: TGATGAAAGCAATATCTGGAGAAAAGGCCAAGGACTGGACACAAGGAGAG GTTTTTGGCATCCTAAAAGAGGCTGGATACACTGAACAAATGGTATACAAA
genomic: TGATGAAAGCAATATCTGGAGAAAAGGCCAAGGACTGGACACAAGGAGAGgtttggaatt ... tttgctgcagGTTTCTGGCATCCTAAAAGAGGCTGGATACACTGAACAAATGGTATACAAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGTGTGGACCCCCGGGTATGATGAAAGCAATATCTGGAGAAAAGGCCAAGGACTGGACACAAGGAGAGgtttggaattaatttatggtgtctgattttatctcctggatccctgtactgatgcaccttatcgttgatttgctgcag
- - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA