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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATATCTTTACTTTATGCTAATGTCTCCCCGGATGACATACTGCTTAAACAAAAGCTTGACATTCTTGCAACAAGCCACCCAAACTTAAAGgtaaaaatcttgtttagcaaagataacattattaaccaatgttatgaataaattaattggaaacttttttttggcaaaatttgcag

Basic information

species Glycine max
transcript GLYMA17G12530.1
intron # 10
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|11414158|gb|BF426169.1|BF426169
EST:     TGCTTAAACAAAAGCTTGACATTCTTGCAACAAGCCACCCANACTTATAG                         ATATTCTACACTGTAGATAATCCAACGAAAAATTGGAGAAGAGGTGCANGT
genomic: TGCTTAAACAAAAGCTTGACATTCTTGCAACAAGCCACCCAAACTTAAAGgtaaaaatct ... aaatttgcagATATTCTACACTGTAGATAATCCAACGAAAAATTGGAGAGGAGGTGCAGGT
EST: gi|208246950|gb|GE043540.1|GE043540
EST:     TGCTTAAACAAAAGCTTGACATTCTTGCAACAAGCCACCCAAACTTAAAG                         ATATTCTACACTGTAGATAATCCAACGAAAAATTGGAGAGGAGGTGCAGGT
genomic: TGCTTAAACAAAAGCTTGACATTCTTGCAACAAGCCACCCAAACTTAAAGgtaaaaatct ... aaatttgcagATATTCTACACTGTAGATAATCCAACGAAAAATTGGAGAGGAGGTGCAGGT
EST: gi|208290592|gb|GE082768.1|GE082768
EST:     AAACAAAAGCTTGACATTCTTGCAACAAGCCACCCAAACTTAAAG                         ATATTCTACACTGTAGATAATCCAACGAAAAATTGGAGAGGAGGTGCAGGT
genomic: AAACAAAAGCTTGACATTCTTGCAACAAGCCACCCAAACTTAAAGgtaaaaatct ... aaatttgcagATATTCTACACTGTAGATAATCCAACGAAAAATTGGAGAGGAGGTGCAGGT
EST: gi|13790600|gb|BG653191.1|BG653191
EST:     TGCTTAAACAAAAGCTTGACATTCTTGCAACAAGCCACCCAAACTTAAAG                         ATATTCTACACTGTAGATAATCCAACGAAAAATTGGAGAGGAGGTGCAGGT
genomic: TGCTTAAACAAAAGCTTGACATTCTTGCAACAAGCCACCCAAACTTAAAGgtaaaaatct ... aaatttgcagATATTCTACACTGTAGATAATCCAACGAAAAATTGGAGAGGAGGTGCAGGT
EST: gi|254335318|gb|GR846815.1|GR846815
EST:     TGCTTAAACAAAAGCTTGACATTCTTGCAACAAGCCACCCAAACTTAAAG                         ATATTCTACACTGTAGATAATCCAACGAAAAATTGGAGAGGAGGTGCAGGT
genomic: TGCTTAAACAAAAGCTTGACATTCTTGCAACAAGCCACCCAAACTTAAAGgtaaaaatct ... aaatttgcagATATTCTACACTGTAGATAATCCAACGAAAAATTGGAGAGGAGGTGCAGGT
EST: gi|209717394|gb|BW659070.1|BW659070
EST:     TGCTTAAACAAAAGCTTGACATTCTTGCAACAAGCCACCCAAACTTAAAG                         ATATTCTACACTGTAGATAATCCAACGAAAAATTGGAGAGGAGGTGCAGGT
genomic: TGCTTAAACAAAAGCTTGACATTCTTGCAACAAGCCACCCAAACTTAAAGgtaaaaatct ... aaatttgcagATATTCTACACTGTAGATAATCCAACGAAAAATTGGAGAGGAGGTGCAGGT
EST: gi|214009286|gb|DB989918.1|DB989918
EST:     TGCTTAAACAAAAGCTTGACATTCTTGCAACAAGCCACCCAAACTTAAAG                         ATCCGCTACACTGTAGATAATCCAACGAAAAATTGGAGAGGAGGTGCAGGT
genomic: TGCTTAAACAAAAGCTTGACATTCTTGCAACAAGCCACCCAAACTTAAAGgtaaaaatct ... aaatttgcagATATTCTACACTGTAGATAATCCAACGAAAAATTGGAGAGGAGGTGCAGGT
EST: gi|6071914|gb|AW101301.1|AW101301
EST:     TGCTTAAACAAAAGCTTGACATTCTTGCAACAAGCCACCCAAACTTAAAG                         ATATTCTACACTGTAGATAATCCAACGAAAAATTGGAGAGGAGGTGCAGGT
genomic: TGCTTAAACAAAAGCTTGACATTCTTGCAACAAGCCACCCAAACTTAAAGgtaaaaatct ... aaatttgcagATATTCTACACTGTAGATAATCCAACGAAAAATTGGAGAGGAGGTGCAGGT
EST: gi|16343984|gb|BI969579.1|BI969579
EST:     TGCTTAAACAAAAGCTTGACATTCTTGCAACAAGCCACCCAAACTTAAAG                         ATATTTTACACTGTAGATAATCCAACGAAAAATTGGAGAGGAGGTGCAGGT
genomic: TGCTTAAACAAAAGCTTGACATTCTTGCAACAAGCCACCCAAACTTAAAGgtaaaaatct ... aaatttgcagATATTCTACACTGTAGATAATCCAACGAAAAATTGGAGAGGAGGTGCAGGT