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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTACAGAAGATAACACTACAAAAAGCACAAAAGTTAGGAGCATTGTTTGTTCTGATTGTGATGGAAATGgtaagtgaaaatgttgagttttaatttcttcttattacgatcttttgtagctttcttattctttatttaaagacggtttaaattaatgagagccttcgtg...

Basic information

species Glycine max
transcript GLYMA17G12370.1
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58018467|gb|CX705209.1|CX705209
EST:     AAAAAGCACAAAAGTTAGGAGCATTGTTTGTTCTGATTGTGATGGAAATG                         GTGCAATATCATGTACTCAATGCAAAGGTACTGGAGTTAATTCAGTAGATC
genomic: AAAAAGCACAAAAGTTAGGAGCATTGTTTGTTCTGATTGTGATGGAAATGgtaagtgaaa ... caactgccagGTGCAATATCATGTACTCAATGCAAAGGTACTGGAGTTAATTCAGTAGATC
EST: gi|6964373|gb|AW433066.1|AW433066
EST:     AAAAAGCACAAAAGTTAGGAGCATTGTTTGTTCTGATTGTGATGGAAATG                         GTGCAATATCATGTACTCAATGCAAAGGTACTGGAGTTAATTCAGTAGATC
genomic: AAAAAGCACAAAAGTTAGGAGCATTGTTTGTTCTGATTGTGATGGAAATGgtaagtgaaa ... caactgccagGTGCAATATCATGTACTCAATGCAAAGGTACTGGAGTTAATTCAGTAGATC
EST: gi|151398924|gb|EV268795.1|EV268795
EST:     AAAAAGCACAAAAGTTAGGAGCATTGTTTGTTCTGATTGTGATGGAAATG                         GTGCAATATCATGTACTCAATGCAAAGGTACTGGAGTTAATTCAGTAGACC
genomic: AAAAAGCACAAAAGTTAGGAGCATTGTTTGTTCTGATTGTGATGGAAATGgtaagtgaaa ... caactgccagGTGCAATATCATGTACTCAATGCAAAGGTACTGGAGTTAATTCAGTAGATC
EST: gi|11687502|gb|BF595178.1|BF595178
EST:     AAAAAGCACAAAAGTTAGGAGCATTGTTTGTTCTGATTGTGATGGAAATG                         GTGCAATATCATGTACTCAATGCAAAGGTACTGGAGTTAATTCAGTAGATC
genomic: AAAAAGCACAAAAGTTAGGAGCATTGTTTGTTCTGATTGTGATGGAAATGgtaagtgaaa ... caactgccagGTGCAATATCATGTACTCAATGCAAAGGTACTGGAGTTAATTCAGTAGATC
EST: gi|8825823|gb|BE209553.1|BE209553
EST:     TGTTCTGATTGTGATGGAAATG                         GTGCAATATCATGTACTCAATGCAAAGGTACTGGAGTTAATTCAGTAGATC
genomic: TGTTCTGATTGTGATGGAAATGgtaagtgaaa ... caactgccagGTGCAATATCATGTACTCAATGCAAAGGTACTGGAGTTAATTCAGTAGATC
EST: gi|298187460|gb|HO034609.1|HO034609
EST:     AAAAAGCACAAAAGTTAGGAGCATTGTTTGTTCTGATTGTGATGGAAATG                         GTGCAATATCATGCACTCAATGCAAAGGTACTGGAGTTAATTCAGTAGATC
genomic: AAAAAGCACAAAAGTTAGGAGCATTGTTTGTTCTGATTGTGATGGAAATGgtaagtgaaa ... caactgccagGTGCAATATCATGTACTCAATGCAAAGGTACTGGAGTTAATTCAGTAGATC
EST: gi|10255183|gb|BE822949.1|BE822949
EST:     AAAAAGCACAAAAGTTAGGAGCATTGTTTGTTCTGATTGTGATGGAAATG                         GTGCAATATCATGTACTCAATGCAAAGGTACTGGAGTTAATTCAGTAGATC
genomic: AAAAAGCACAAAAGTTAGGAGCATTGTTTGTTCTGATTGTGATGGAAATGgtaagtgaaa ... caactgccagGTGCAATATCATGTACTCAATGCAAAGGTACTGGAGTTAATTCAGTAGATC
EST: gi|120529846|gb|EH257980.1|EH257980
EST:     AAAAAGCACAAAAGTTAGGAGCATTGTTTGTTCTGATTGTGATGGAAATG                         GTGCAATATCATGTACTCAATGCAAAGGTACTGGAGTTAATTCAGTAGATC
genomic: AAAAAGCACAAAAGTTAGGAGCATTGTTTGTTCTGATTGTGATGGAAATGgtaagtgaaa ... caactgccagGTGCAATATCATGTACTCAATGCAAAGGTACTGGAGTTAATTCAGTAGATC
EST: gi|120529911|gb|EH258045.1|EH258045
EST:     CAAAAGCACCAAAGTTAGGAGCATTGTTTGTTCTGATTGTGATGGAAATG                         GTGCAATATCATGTACTCAATGCAAAGGTACTGGAGTTAATTCAGTAGATC
genomic: AAAAAGCACAAAAGTTAGGAGCATTGTTTGTTCTGATTGTGATGGAAATGgtaagtgaaa ... caactgccagGTGCAATATCATGTACTCAATGCAAAGGTACTGGAGTTAATTCAGTAGATC
EST: gi|192314267|gb|FK007005.1|FK007005
EST:     AAAAAGCACAAAAGTTAGGAGCATTGTTTGTTCTGATTGTGATGGAAATG                         GTGCAATATCATGTACTCAATGCAAAGGTACTGGAGTTAATTCAGTAGATC
genomic: AAAAAGCACAAAAGTTAGGAGCATTGTTTGTTCTGATTGTGATGGAAATGgtaagtgaaa ... caactgccagGTGCAATATCATGTACTCAATGCAAAGGTACTGGAGTTAATTCAGTAGATC
EST: gi|192314268|gb|FK007006.1|FK007006
EST:     AAAAAGCACAAAAGTTAGGAGCATTGTTTGTTCTGATTGTGATGGAAATG                         GTGCAATATCATGTACTCAATGCAAAGGTACTGGAGTTAATTCAGTAGATC
genomic: AAAAAGCACAAAAGTTAGGAGCATTGTTTGTTCTGATTGTGATGGAAATGgtaagtgaaa ... caactgccagGTGCAATATCATGTACTCAATGCAAAGGTACTGGAGTTAATTCAGTAGATC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GCTACAGAAGATAACACTACAAAAAGCACAAAAGTTAGGAGCATTGTTTGTTCTGATTGTGATGGAAATGgtaagtgaaaatgttgagttttaatttcttcttattacgatcttttgtagctttcttattctttatttaaagacggtttaaattaatgagagccttcgtg

- - - - - - - - - - - - - - - - - -  GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA