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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGGCAGTTACCGGTAATTCGGTTACCCGAAAGGCTTTTGAGATGAAAGAGGTGTGTCAGAATTCTGAAGTTCCAAACTTTCAGTCCTTGAAGGTTAAGgtgagaattgagattgattttagtatcccatttacaattaaggtgctttgtctttgtgctcagtttttttcttttttctttttgtgtaaaaaatgctagc...

Basic information

species Glycine max
transcript GLYMA17G12370.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58018467|gb|CX705209.1|CX705209
EST:     AGGTGTGTCAGAATTCTGAAGTTCCAAACTTTCAGTCCTTGAAGGTTAAG                         GCTACAGAAGATAACACTACAAAAAGCACAAAAGTTAGGAGCATTGTTTGT
genomic: AGGTGTGTCAGAATTCTGAAGTTCCAAACTTTCAGTCCTTGAAGGTTAAGgtgagaattg ... tttaatacagGCTACAGAAGATAACACTACAAAAAGCACAAAAGTTAGGAGCATTGTTTGT
EST: gi|6964373|gb|AW433066.1|AW433066
EST:     AGGTGTGTCAGAATTCTGAAGTTCCAAACTTTCAGTCCTTGAAGGTTAAG                         GCTACAGAAGATAACACTACAAAAAGCACAAAAGTTAGGAGCATTGTTTGT
genomic: AGGTGTGTCAGAATTCTGAAGTTCCAAACTTTCAGTCCTTGAAGGTTAAGgtgagaattg ... tttaatacagGCTACAGAAGATAACACTACAAAAAGCACAAAAGTTAGGAGCATTGTTTGT
EST: gi|151398924|gb|EV268795.1|EV268795
EST:     AGGTGTGTCAGAATTCTGAAGTTCCAAACTTTCAGTCCTTGAAGGTTAAG                         GCTACAGAAGATAACACTACAAAAAGCACAAAAGTTAGGAGCATTGTTTGT
genomic: AGGTGTGTCAGAATTCTGAAGTTCCAAACTTTCAGTCCTTGAAGGTTAAGgtgagaattg ... tttaatacagGCTACAGAAGATAACACTACAAAAAGCACAAAAGTTAGGAGCATTGTTTGT
EST: gi|11687502|gb|BF595178.1|BF595178
EST:     AGGTGTGTCAGAATTCTGAAGTTCCAAACTTTCAGTCCTTGAAGGTTAAG                         GCTACAGAAGATAACACTACAAAAAGCACAAAAGTTAGGAGCATTGTTTGT
genomic: AGGTGTGTCAGAATTCTGAAGTTCCAAACTTTCAGTCCTTGAAGGTTAAGgtgagaattg ... tttaatacagGCTACAGAAGATAACACTACAAAAAGCACAAAAGTTAGGAGCATTGTTTGT
EST: gi|298187460|gb|HO034609.1|HO034609
EST:     AGGTGTGTCAGAATTCTGAAGTTCCAAACTTTCAGTCCTTGAAGGTTAAG                         GCTACAGAAGATAACACTACAAAAAGCACAAAAGTTAGGAGCATTGTTTGT
genomic: AGGTGTGTCAGAATTCTGAAGTTCCAAACTTTCAGTCCTTGAAGGTTAAGgtgagaattg ... tttaatacagGCTACAGAAGATAACACTACAAAAAGCACAAAAGTTAGGAGCATTGTTTGT
EST: gi|10255183|gb|BE822949.1|BE822949
EST:     AGGTGTGTCAGAATTCTGAAGTTCCAAACTTTCAGTCCTTGAAGGTTAAG                         GCTACAGAAGATAACACTACAAAAAGCACAAAAGTTAGGAGCATTGTTTGT
genomic: AGGTGTGTCAGAATTCTGAAGTTCCAAACTTTCAGTCCTTGAAGGTTAAGgtgagaattg ... tttaatacagGCTACAGAAGATAACACTACAAAAAGCACAAAAGTTAGGAGCATTGTTTGT
EST: gi|120529846|gb|EH257980.1|EH257980
EST:     AGGTGTGTCAGAATTCTGAAGTTCCAAACTTTCAGTCCTTGAAGGTTAAG                         GCTACAGAAGATAACACTACAAAAAGCACAAAAGTTAGGAGCATTGTTTGT
genomic: AGGTGTGTCAGAATTCTGAAGTTCCAAACTTTCAGTCCTTGAAGGTTAAGgtgagaattg ... tttaatacagGCTACAGAAGATAACACTACAAAAAGCACAAAAGTTAGGAGCATTGTTTGT
EST: gi|120529911|gb|EH258045.1|EH258045
EST:     AGGTGTGTCAGAATTTTGAAGTTCCCAACTTTCAGTCCTTGAAGGTTAAG                         GCTACAGAAGATAACACTACCAAAAGCACCAAAGTTAGGAGCATTGTTTGT
genomic: AGGTGTGTCAGAATTCTGAAGTTCCAAACTTTCAGTCCTTGAAGGTTAAGgtgagaattg ... tttaatacagGCTACAGAAGATAACACTACAAAAAGCACAAAAGTTAGGAGCATTGTTTGT
EST: gi|192314267|gb|FK007005.1|FK007005
EST:     AGGTGTGTCAGAATTCTGAAGTTCCAAACTTTCAGTCCTTGAAGGTTAAG                         GCTACAGAAGATAACACTACAAAAAGCACAAAAGTTAGGAGCATTGTTTGT
genomic: AGGTGTGTCAGAATTCTGAAGTTCCAAACTTTCAGTCCTTGAAGGTTAAGgtgagaattg ... tttaatacagGCTACAGAAGATAACACTACAAAAAGCACAAAAGTTAGGAGCATTGTTTGT
EST: gi|192314268|gb|FK007006.1|FK007006
EST:     AGGTGTGTCAGAATTCTGAAGTTCCAAACTTTCAGTCCTTGAAGGTTAAG                         GCTACAGAAGATAACACTACAAAAAGCACAAAAGTTAGGAGCATTGTTTGT
genomic: AGGTGTGTCAGAATTCTGAAGTTCCAAACTTTCAGTCCTTGAAGGTTAAGgtgagaattg ... tttaatacagGCTACAGAAGATAACACTACAAAAAGCACAAAAGTTAGGAGCATTGTTTGT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GGGCAGTTACCGGTAATTCGGTTACCCGAAAGGCTTTTGAGATGAAAGAGGTGTGTCAGAATTCTGAAGTTCCAAACTTTCAGTCCTTGAAGGTTAAGgtgagaattgagattgattttagtatcccatttacaattaaggtgctttgtctttgtgctcagtttttttcttttttctttttgtgtaaaaaatgctagc

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtaaaaaa