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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGGCTACAACGTTTGATATTTAGGAGTTCCTGTGATTGAGAATGGCGCACTCTCTGTGTTTTGCTCCCATTTGTTCCTTGAAATCCTCAAACAGACCTGgtataaataactctgtttgtttgtgcttttttgggttttgcagtgcttatgtaattcaatgagattttgtatcaatttaaatag

Basic information

species Glycine max
transcript GLYMA17G12370.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58018467|gb|CX705209.1|CX705209
EST:     CTCTCTGTGTTTTGCTCCCATTTGTTCCTTGAAATCCTCAAACAGACCTG                         GGGCAGTTACCGGTAATTCGGTTACCCGAAAGGCTTTTGAGATGAAAGAGG
genomic: CTCTCTGTGTTTTGCTCCCATTTGTTCCTTGAAATCCTCAAACAGACCTGgtataaataa ... atttaaatagGGGCAGTTACCGGTAATTCGGTTACCCGAAAGGCTTTTGAGATGAAAGAGG
EST: gi|6964373|gb|AW433066.1|AW433066
EST:     CTCTCTGTGTTTTGCTCCCATTTGTTCCTTGAAATCCTCAAACAGACCTG                         GGGCAGTTACCGGTAATTCGGTTACCCGAAAGGCTTTTGAGATGAAAGAGG
genomic: CTCTCTGTGTTTTGCTCCCATTTGTTCCTTGAAATCCTCAAACAGACCTGgtataaataa ... atttaaatagGGGCAGTTACCGGTAATTCGGTTACCCGAAAGGCTTTTGAGATGAAAGAGG
EST: gi|151398924|gb|EV268795.1|EV268795
EST:     CTCTCTGTGTTTTGCTCCCATTTGTTCCTTGAAATCCTCAAACAGACCTG                         GGGCAGTTACCGGTAATTCGGTTACCCGAAAGGCTTTTGAGATGAAAGAGG
genomic: CTCTCTGTGTTTTGCTCCCATTTGTTCCTTGAAATCCTCAAACAGACCTGgtataaataa ... atttaaatagGGGCAGTTACCGGTAATTCGGTTACCCGAAAGGCTTTTGAGATGAAAGAGG
EST: gi|11687502|gb|BF595178.1|BF595178
EST:     CTCTCTGTGTTTTGCTCCCATTTGTTCCTTGAAATCCTCAAACAGACCTG                         GGGCAGTTACCGGTAATTCGGTTACCCGAAAGGCTTTTGAGATGAAAGAGG
genomic: CTCTCTGTGTTTTGCTCCCATTTGTTCCTTGAAATCCTCAAACAGACCTGgtataaataa ... atttaaatagGGGCAGTTACCGGTAATTCGGTTACCCGAAAGGCTTTTGAGATGAAAGAGG
EST: gi|298187460|gb|HO034609.1|HO034609
EST:     CTCTCTGTGTTTTGCTCCCATTTGTTCCTTGAAATCCTCAAACAGACCTG                         GGGCAGTTACCGGTAATTCGGTTACCCGAAAGGCTTTTGAGATGAAAGAGG
genomic: CTCTCTGTGTTTTGCTCCCATTTGTTCCTTGAAATCCTCAAACAGACCTGgtataaataa ... atttaaatagGGGCAGTTACCGGTAATTCGGTTACCCGAAAGGCTTTTGAGATGAAAGAGG
EST: gi|10255183|gb|BE822949.1|BE822949
EST:     CTCTCTGTGTTTTGCTCCCATTTGTTCCTTGAAATCCTCAAACAGACCTG                         GGGCAGTTACCGGTAATTCGGTTACCCGAAAGGCTTTTGAGATGAAAGAGG
genomic: CTCTCTGTGTTTTGCTCCCATTTGTTCCTTGAAATCCTCAAACAGACCTGgtataaataa ... atttaaatagGGGCAGTTACCGGTAATTCGGTTACCCGAAAGGCTTTTGAGATGAAAGAGG
EST: gi|120529846|gb|EH257980.1|EH257980
EST:     CTCTCTGTGTTTTGCTCCCATTTGTTCCTTGAAATCCTCAAACAGACCTG                         GGGCAGTTACCGGTAATTCGGTTACCCGAAAGGCTTTTGAGATGAAAGAGG
genomic: CTCTCTGTGTTTTGCTCCCATTTGTTCCTTGAAATCCTCAAACAGACCTGgtataaataa ... atttaaatagGGGCAGTTACCGGTAATTCGGTTACCCGAAAGGCTTTTGAGATGAAAGAGG
EST: gi|120529911|gb|EH258045.1|EH258045
EST:     CTCTCTGTGTTTTGCTCCCATTTGTTCCTTGAAATCCTCAAACAGACCTG                         GGGCAGTTACCGGTAATTCGGTTACCCGAAAGGCTTTTGAGATGAAAGAGG
genomic: CTCTCTGTGTTTTGCTCCCATTTGTTCCTTGAAATCCTCAAACAGACCTGgtataaataa ... atttaaatagGGGCAGTTACCGGTAATTCGGTTACCCGAAAGGCTTTTGAGATGAAAGAGG
EST: gi|192314267|gb|FK007005.1|FK007005
EST:     CTCTCTGTGTTTTGCTCCCATTTGTTCCTTGAAATCCTCAAACAGACCTG                         GGGCAGTTACCGGTAATTCGGTTACCCGAAAGGCTTTTGAGATGAAAGAGG
genomic: CTCTCTGTGTTTTGCTCCCATTTGTTCCTTGAAATCCTCAAACAGACCTGgtataaataa ... atttaaatagGGGCAGTTACCGGTAATTCGGTTACCCGAAAGGCTTTTGAGATGAAAGAGG
EST: gi|12689245|gb|BG155581.1|BG155581
EST:     CTCTCTGTGTTTTGCTCCCATTTGTTCCTTGAAATCCTCAAACAGACCTG                         GGGCAGTTACCGGTAATTCGGTTACCCGAAAGGCTTTTGAGATGAAAGAGG
genomic: CTCTCTGTGTTTTGCTCCCATTTGTTCCTTGAAATCCTCAAACAGACCTGgtataaataa ... atttaaatagGGGCAGTTACCGGTAATTCGGTTACCCGAAAGGCTTTTGAGATGAAAGAGG
EST: gi|192314268|gb|FK007006.1|FK007006
EST:     CTCTCTGTGTTTTGCTCCCATTTGTTCCTTGAAATCCTCAAACAGACCTG                         GGGCAGTTACCGGTAATTCGGTTACCCGAAAGGCTTTTGAGATGAAAGAGG
genomic: CTCTCTGTGTTTTGCTCCCATTTGTTCCTTGAAATCCTCAAACAGACCTGgtataaataa ... atttaaatagGGGCAGTTACCGGTAATTCGGTTACCCGAAAGGCTTTTGAGATGAAAGAGG