1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtataaataactctgtttgtttgtgcttttttgggttttgcagtgcttatgtaattcaatgagattttgtatcaatttaaatagGGGCAGTTACCGGTAATTCGGTTACCCGAAAGGCTTTTGAGATGAAAGAGGTGTGTCAGAATTCTGAAGTTCCAAACTTTCAGTCCTTGAAGGTTAAG
species | Glycine max |
transcript | GLYMA17G12370.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CTCTCTGTGTTTTGCTCCCATTTGTTCCTTGAAATCCTCAAACAGACCTG GGGCAGTTACCGGTAATTCGGTTACCCGAAAGGCTTTTGAGATGAAAGAGGEST: gi|6964373|gb|AW433066.1|AW433066
genomic: CTCTCTGTGTTTTGCTCCCATTTGTTCCTTGAAATCCTCAAACAGACCTGgtataaataa ... atttaaatagGGGCAGTTACCGGTAATTCGGTTACCCGAAAGGCTTTTGAGATGAAAGAGG
EST: CTCTCTGTGTTTTGCTCCCATTTGTTCCTTGAAATCCTCAAACAGACCTG GGGCAGTTACCGGTAATTCGGTTACCCGAAAGGCTTTTGAGATGAAAGAGGEST: gi|151398924|gb|EV268795.1|EV268795
genomic: CTCTCTGTGTTTTGCTCCCATTTGTTCCTTGAAATCCTCAAACAGACCTGgtataaataa ... atttaaatagGGGCAGTTACCGGTAATTCGGTTACCCGAAAGGCTTTTGAGATGAAAGAGG
EST: CTCTCTGTGTTTTGCTCCCATTTGTTCCTTGAAATCCTCAAACAGACCTG GGGCAGTTACCGGTAATTCGGTTACCCGAAAGGCTTTTGAGATGAAAGAGGEST: gi|11687502|gb|BF595178.1|BF595178
genomic: CTCTCTGTGTTTTGCTCCCATTTGTTCCTTGAAATCCTCAAACAGACCTGgtataaataa ... atttaaatagGGGCAGTTACCGGTAATTCGGTTACCCGAAAGGCTTTTGAGATGAAAGAGG
EST: CTCTCTGTGTTTTGCTCCCATTTGTTCCTTGAAATCCTCAAACAGACCTG GGGCAGTTACCGGTAATTCGGTTACCCGAAAGGCTTTTGAGATGAAAGAGGEST: gi|298187460|gb|HO034609.1|HO034609
genomic: CTCTCTGTGTTTTGCTCCCATTTGTTCCTTGAAATCCTCAAACAGACCTGgtataaataa ... atttaaatagGGGCAGTTACCGGTAATTCGGTTACCCGAAAGGCTTTTGAGATGAAAGAGG
EST: CTCTCTGTGTTTTGCTCCCATTTGTTCCTTGAAATCCTCAAACAGACCTG GGGCAGTTACCGGTAATTCGGTTACCCGAAAGGCTTTTGAGATGAAAGAGGEST: gi|10255183|gb|BE822949.1|BE822949
genomic: CTCTCTGTGTTTTGCTCCCATTTGTTCCTTGAAATCCTCAAACAGACCTGgtataaataa ... atttaaatagGGGCAGTTACCGGTAATTCGGTTACCCGAAAGGCTTTTGAGATGAAAGAGG
EST: CTCTCTGTGTTTTGCTCCCATTTGTTCCTTGAAATCCTCAAACAGACCTG GGGCAGTTACCGGTAATTCGGTTACCCGAAAGGCTTTTGAGATGAAAGAGGEST: gi|120529846|gb|EH257980.1|EH257980
genomic: CTCTCTGTGTTTTGCTCCCATTTGTTCCTTGAAATCCTCAAACAGACCTGgtataaataa ... atttaaatagGGGCAGTTACCGGTAATTCGGTTACCCGAAAGGCTTTTGAGATGAAAGAGG
EST: CTCTCTGTGTTTTGCTCCCATTTGTTCCTTGAAATCCTCAAACAGACCTG GGGCAGTTACCGGTAATTCGGTTACCCGAAAGGCTTTTGAGATGAAAGAGGEST: gi|120529911|gb|EH258045.1|EH258045
genomic: CTCTCTGTGTTTTGCTCCCATTTGTTCCTTGAAATCCTCAAACAGACCTGgtataaataa ... atttaaatagGGGCAGTTACCGGTAATTCGGTTACCCGAAAGGCTTTTGAGATGAAAGAGG
EST: CTCTCTGTGTTTTGCTCCCATTTGTTCCTTGAAATCCTCAAACAGACCTG GGGCAGTTACCGGTAATTCGGTTACCCGAAAGGCTTTTGAGATGAAAGAGGEST: gi|192314267|gb|FK007005.1|FK007005
genomic: CTCTCTGTGTTTTGCTCCCATTTGTTCCTTGAAATCCTCAAACAGACCTGgtataaataa ... atttaaatagGGGCAGTTACCGGTAATTCGGTTACCCGAAAGGCTTTTGAGATGAAAGAGG
EST: CTCTCTGTGTTTTGCTCCCATTTGTTCCTTGAAATCCTCAAACAGACCTG GGGCAGTTACCGGTAATTCGGTTACCCGAAAGGCTTTTGAGATGAAAGAGGEST: gi|12689245|gb|BG155581.1|BG155581
genomic: CTCTCTGTGTTTTGCTCCCATTTGTTCCTTGAAATCCTCAAACAGACCTGgtataaataa ... atttaaatagGGGCAGTTACCGGTAATTCGGTTACCCGAAAGGCTTTTGAGATGAAAGAGG
EST: CTCTCTGTGTTTTGCTCCCATTTGTTCCTTGAAATCCTCAAACAGACCTG GGGCAGTTACCGGTAATTCGGTTACCCGAAAGGCTTTTGAGATGAAAGAGGEST: gi|192314268|gb|FK007006.1|FK007006
genomic: CTCTCTGTGTTTTGCTCCCATTTGTTCCTTGAAATCCTCAAACAGACCTGgtataaataa ... atttaaatagGGGCAGTTACCGGTAATTCGGTTACCCGAAAGGCTTTTGAGATGAAAGAGG
EST: CTCTCTGTGTTTTGCTCCCATTTGTTCCTTGAAATCCTCAAACAGACCTG GGGCAGTTACCGGTAATTCGGTTACCCGAAAGGCTTTTGAGATGAAAGAGG
genomic: CTCTCTGTGTTTTGCTCCCATTTGTTCCTTGAAATCCTCAAACAGACCTGgtataaataa ... atttaaatagGGGCAGTTACCGGTAATTCGGTTACCCGAAAGGCTTTTGAGATGAAAGAGG
tttgggttttgcagtgcttatgtaattcaatgagattttgtatcaatttaaatagGGGCAGTTACCGGTAATTCGGTTACCCGAAAGGCTTTTGAGATGAAAGAGGTGTGTCAGAATTCTGAAGTTCCAAACTTTCAGTCCTTGAAGGTTAAG
agattttgtatcaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtataaataactctgtttgtttgtgcttttttgggttttgcagtgcttatgtaattcaatgagattttgtatcaatttaaatagGGGCAGTTACCGGTAATTCGGTTACCCGAAAGGCTTTTGAGATGAAAGAGGTGTGTCAGAATTCTGAAGTTCCAAACTTTCAGTCCTTGAAGGTTAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG