1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...aatttcttgaagagctagctaatatgttaagttttttcttcctttccattggaaacatcagtattcaactcactcgattgttcttttgctcaactgccagGTGCAATATCATGTACTCAATGCAAAGGTACTGGAGTTAATTCAGTAGATCACTTCAATGGACAATTTAAAGCCGGTGGATTGTGTTGGCTATGCAG
species | Glycine max |
transcript | GLYMA17G12370.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AAAAAGCACAAAAGTTAGGAGCATTGTTTGTTCTGATTGTGATGGAAATG GTGCAATATCATGTACTCAATGCAAAGGTACTGGAGTTAATTCAGTAGATCEST: gi|6964373|gb|AW433066.1|AW433066
genomic: AAAAAGCACAAAAGTTAGGAGCATTGTTTGTTCTGATTGTGATGGAAATGgtaagtgaaa ... caactgccagGTGCAATATCATGTACTCAATGCAAAGGTACTGGAGTTAATTCAGTAGATC
EST: AAAAAGCACAAAAGTTAGGAGCATTGTTTGTTCTGATTGTGATGGAAATG GTGCAATATCATGTACTCAATGCAAAGGTACTGGAGTTAATTCAGTAGATCEST: gi|151398924|gb|EV268795.1|EV268795
genomic: AAAAAGCACAAAAGTTAGGAGCATTGTTTGTTCTGATTGTGATGGAAATGgtaagtgaaa ... caactgccagGTGCAATATCATGTACTCAATGCAAAGGTACTGGAGTTAATTCAGTAGATC
EST: AAAAAGCACAAAAGTTAGGAGCATTGTTTGTTCTGATTGTGATGGAAATG GTGCAATATCATGTACTCAATGCAAAGGTACTGGAGTTAATTCAGTAGACCEST: gi|11687502|gb|BF595178.1|BF595178
genomic: AAAAAGCACAAAAGTTAGGAGCATTGTTTGTTCTGATTGTGATGGAAATGgtaagtgaaa ... caactgccagGTGCAATATCATGTACTCAATGCAAAGGTACTGGAGTTAATTCAGTAGATC
EST: AAAAAGCACAAAAGTTAGGAGCATTGTTTGTTCTGATTGTGATGGAAATG GTGCAATATCATGTACTCAATGCAAAGGTACTGGAGTTAATTCAGTAGATCEST: gi|8825823|gb|BE209553.1|BE209553
genomic: AAAAAGCACAAAAGTTAGGAGCATTGTTTGTTCTGATTGTGATGGAAATGgtaagtgaaa ... caactgccagGTGCAATATCATGTACTCAATGCAAAGGTACTGGAGTTAATTCAGTAGATC
EST: TGTTCTGATTGTGATGGAAATG GTGCAATATCATGTACTCAATGCAAAGGTACTGGAGTTAATTCAGTAGATCEST: gi|298187460|gb|HO034609.1|HO034609
genomic: TGTTCTGATTGTGATGGAAATGgtaagtgaaa ... caactgccagGTGCAATATCATGTACTCAATGCAAAGGTACTGGAGTTAATTCAGTAGATC
EST: AAAAAGCACAAAAGTTAGGAGCATTGTTTGTTCTGATTGTGATGGAAATG GTGCAATATCATGCACTCAATGCAAAGGTACTGGAGTTAATTCAGTAGATCEST: gi|10255183|gb|BE822949.1|BE822949
genomic: AAAAAGCACAAAAGTTAGGAGCATTGTTTGTTCTGATTGTGATGGAAATGgtaagtgaaa ... caactgccagGTGCAATATCATGTACTCAATGCAAAGGTACTGGAGTTAATTCAGTAGATC
EST: AAAAAGCACAAAAGTTAGGAGCATTGTTTGTTCTGATTGTGATGGAAATG GTGCAATATCATGTACTCAATGCAAAGGTACTGGAGTTAATTCAGTAGATCEST: gi|120529846|gb|EH257980.1|EH257980
genomic: AAAAAGCACAAAAGTTAGGAGCATTGTTTGTTCTGATTGTGATGGAAATGgtaagtgaaa ... caactgccagGTGCAATATCATGTACTCAATGCAAAGGTACTGGAGTTAATTCAGTAGATC
EST: AAAAAGCACAAAAGTTAGGAGCATTGTTTGTTCTGATTGTGATGGAAATG GTGCAATATCATGTACTCAATGCAAAGGTACTGGAGTTAATTCAGTAGATCEST: gi|120529911|gb|EH258045.1|EH258045
genomic: AAAAAGCACAAAAGTTAGGAGCATTGTTTGTTCTGATTGTGATGGAAATGgtaagtgaaa ... caactgccagGTGCAATATCATGTACTCAATGCAAAGGTACTGGAGTTAATTCAGTAGATC
EST: CAAAAGCACCAAAGTTAGGAGCATTGTTTGTTCTGATTGTGATGGAAATG GTGCAATATCATGTACTCAATGCAAAGGTACTGGAGTTAATTCAGTAGATCEST: gi|192314267|gb|FK007005.1|FK007005
genomic: AAAAAGCACAAAAGTTAGGAGCATTGTTTGTTCTGATTGTGATGGAAATGgtaagtgaaa ... caactgccagGTGCAATATCATGTACTCAATGCAAAGGTACTGGAGTTAATTCAGTAGATC
EST: AAAAAGCACAAAAGTTAGGAGCATTGTTTGTTCTGATTGTGATGGAAATG GTGCAATATCATGTACTCAATGCAAAGGTACTGGAGTTAATTCAGTAGATCEST: gi|192314268|gb|FK007006.1|FK007006
genomic: AAAAAGCACAAAAGTTAGGAGCATTGTTTGTTCTGATTGTGATGGAAATGgtaagtgaaa ... caactgccagGTGCAATATCATGTACTCAATGCAAAGGTACTGGAGTTAATTCAGTAGATC
EST: AAAAAGCACAAAAGTTAGGAGCATTGTTTGTTCTGATTGTGATGGAAATG GTGCAATATCATGTACTCAATGCAAAGGTACTGGAGTTAATTCAGTAGATC
genomic: AAAAAGCACAAAAGTTAGGAGCATTGTTTGTTCTGATTGTGATGGAAATGgtaagtgaaa ... caactgccagGTGCAATATCATGTACTCAATGCAAAGGTACTGGAGTTAATTCAGTAGATC
ccattggaaacatcagtattcaactcactcgattgttcttttgctcaactgccagGTGCAATATCATGTACTCAATGCAAAGGTACTGGAGTTAATTCAGTAGATCACTTCAATGGACAATTTAAAGCCGGTGGATTGTGTTGGCTATGCAG
aactcac putative branch site (score: 2)
ttgttcttttgctc putative PPT
tattcaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aatttcttgaagagctagctaatatgttaagttttttcttcctttccattggaaacatcagtattcaactcactcgattgttcttttgctcaactgccagGTGCAATATCATGTACTCAATGCAAAGGTACTGGAGTTAATTCAGTAGATCACTTCAATGGACAATTTAAAGCCGGTGGATTGTGTTGGCTATGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aactcac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cttttgc