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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttattaaaagatcttatcttagatgtgtaaatataatccgtgctgtgataattgtgatgttactcacatttattatttgtgtattgactttcagTTTAAATTGGCAACATCAACTTTGTAAGAACCCAAGGCCCAACCCTGACATAAAGACCCTTTTTGTGGACCATAGTTGTGGGCAAGTGCAACCAAATGGT

Basic information

species Glycine max
transcript GLYMA17G12110.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G12110.2 (Glycine max), 3'ss of exon 5
lower sequence: Vv11s0016g05620.t01 (Vitis vinifera), 3'ss of exon 5
---gttattaaaagatcttatcttagatgtgtaaatataatccgtgctgtgataattgtgatgttactcacat--ttattatttgtgtattgactttcagTTTAAATTGGCAACATCAACTTTGTAAGAACCCAAGGCCCAACCCTGACATAAAGACCCTTTTTGTGGACCATAGTTGTGGGCAAGTGCAACCAAATGGT------
      |  || | |    ||  | ||  ||    | | ||||      ||||  |||   | ||  |  | |  |  ||     ||| ||      ||||||||||||||| ||||| ||||| || || || |   | |||||||||||||||||||| ||||| || |||| ||||||      ||| |||||||||      
tttcacagcaacaaaaaggattgttgagttgagtttgtcatcctattcatgatttttggttttttcttttcctgatatttccccatgttttattcaacagTTTAAATTGGCAGCATCAGCTTTGCAAAAATCCGAAAGCTAACCCTGACATAAAGACCCTATTTGTAGATCATACTTGTGG------GCAGCCAAATGGTGCAAGG

upper sequence: GLYMA17G12110.2 (Glycine max), 3'ss of exon 5
lower sequence: EFJ36405 (Selaginella moellendorffii), 3'ss of exon 8
gttattaaaagatcttatcttagatgtgtaaatataatccgtgctgtgataattgtgatgttactcacatttattatttgtgtattgactttcagTTTAAATTGGCAACATCAACTTTGTAAGAACCCAAGGCCCAACCCTGACATAAAGACCCTTTTTGTGGACCATAGTTGTGGGCAAGTGCAACCAAATGGT
                        || ||   |    | |  |||       |  ||||   |   | |  | || ||| | | ||   |  |||  | |||||||||||||| ||||| ||||| || ||||||||||| || || || || || ||||| || ||||  ||| |      | |   |    | 
-----------------------gtgcgtccctgcttttccagctacttctgtgctgatagaagaaatacat-ttctttttttcttttttcccagCCTCAATTGGCAACATCAGCTTTGCAAGAATCCTAGGCCCAACCCAGATATCAAAACTCTGTTTGTAGATCATACCTGTAGCGCGCCGAATGGAGCCCGC

upper sequence: GLYMA17G12110.2 (Glycine max), 3'ss of exon 5
lower sequence: EFJ32018 (Selaginella moellendorffii), 3'ss of exon 4
gttattaaaagatcttatcttagatgtgtaaatataatccgtgctgtgataattgtgatgttactcacat-ttattatttgtgtattgactttcagTTTAAATTGGCAACATCAACTTTGTAAGAACCCAAGGCCCAACCCTGACATAAAGACCCTTTTTGTGGACCATAGTTGTGGGCAAGTGCAACCAAATGGT
                        || |||  |    | |  |||       |  ||||   |   |    ||  | ||| | | ||    | |||  | |||||||||||||| ||||| ||||| || ||||||||||| || || || || || ||||| || ||||  |||||      | |   |    | 
-----------------------gtgcgtacctgcttttccagctacttctgtgctgatagaagaaatgcatttctttttttctttttttgtccagCCTCAATTGGCAACATCAGCTTTGCAAGAATCCTAGGCCCAACCCAGATATCAAAACTCTGTTTGTAGATCATACCTGTGGCGCGCCGAATGGAGCCCGC

upper sequence: GLYMA17G12110.2 (Glycine max), 3'ss of exon 5
lower sequence: EFJ37833 (Selaginella moellendorffii), 3'ss of exon 4
gttattaaaagatcttatcttagatgtgtaaatataatccgtgctgtgataattgtgatgttactcacatttattatttgtgtattgactttcagTTTAAATTGGCAACATCAACTTTGTAAGAACCCAAGGCCCAACCCTGACATAAAGACCCTTTTTGTGGACCATAGTTGTGGGCAAGTGCAACCAAATGGT
                        || |||  |    | |  |||       |  ||||   |   |    | || ||||| ||||   || |||  | |||||||||||||| ||||| ||||| || ||||||||||| || || || || || ||||| || ||||  |||||      | |   |    | 
-----------------------gtgcgtacctgcttttccagctacttctgtgctgatagaagaaatgcat-ttctttgtttatttttttccagCCTCAATTGGCAACATCAGCTTTGCAAGAATCCTAGGCCCAACCCAGATATCAAAACTCTGTTTGTAGATCATACCTGTGGCGCGCCGAATGGAGCCCGC

upper sequence: GLYMA17G12110.2 (Glycine max), 3'ss of exon 5
lower sequence: EFJ35798 (Selaginella moellendorffii), 3'ss of exon 4
gttattaaaagatcttatcttagatgtgtaaatataatccgtgctgtgataattgtgatgttactcacatttattatttgtgtattgactttcagTTTAAATTGGCAACATCAACTTTGTAAGAACCCAAGGCCCAACCCTGACATAAAGACCCTTTTTGTGGACCATAGTTGTGGGCAAGTGCAACCAAATGGT
                        || ||   |    | |  |||       |  ||||   |   | |  | |  ||| | | ||   |  |||  | |||||||||||||| ||||| ||||| || ||||||||||| || || || || || ||||| || ||||  |||||      | |   |    | 
-----------------------gtgcgtccctgcttttccagctacttctgtgctgatagaagaaatacatttcgtttttttcttttttcccagCCTCAATTGGCAACATCAGCTTTGCAAGAATCCTAGGCCCAACCCAGATATCAAAACTCTGTTTGTAGATCATACCTGTGGCGCGCCGAATGGAGCCCGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtgctgtgataattgtgatgttactcacatttattatttgtgtattgactttcagTTTAAATTGGCAACATCAACTTTGTAAGAACCCAAGGCCCAACCCTGACATAAAGACCCTTTTTGTGGACCATAGTTGTGGGCAAGTGCAACCAAATGGT
                                                ctttc  CT-rich tract
                            atttattatttgtgta  TA-rich tract