Sequence
atgc intronic sequence ATGC exonic sequenceAATTTATACAAATCAGGGGGTTGCGATTTTGGCTTTGGCAGCAAATGCTGTTCACAAGCTTTGGAAATGGCAGAGAAATGAGCGGAACACTACTGGGAAGgtaatgagcatctattatacttggttgtgtgtacattttatcatgttaatgttcataagattgttaaaacaagtatttcttatacag
Basic information
species | Glycine max |
transcript | GLYMA17G12110.1 |
intron # | 20 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA17G12110.1 (Glycine max), 5'ss of exon 20
lower sequence: Vv11s0016g05620.t01 (Vitis vinifera), 5'ss of exon 20
AATTTATACAAATCAGGGGGTTGCGATTTTGGCTTTGGCAGCAAATGCTGTTCACAAGCTTTGGAAATGGCAGAGAAATGAGCGGAACACTACTGGGAAGgtaatgagcat--------ctattatacttggttgtgtgt----acattttatca------------tgttaatgttcataagattg---ttaaaacaagtatttcttatacag
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AATGTATACAAATTCAGGATTTGCTATATTGGCTTTAGCGTCTAATGCTGTACACAAGCTCTGGAAATGGCAGAGAAATGATCGAAATATAACAACGAAGgttttgattttgatttttattattatttttttttttgtgttagaacattgtatttccattgtgtctttgttaatttccatgagcttgggcttactaacaatttgcctgttgtag
upper sequence: GLYMA17G12110.1 (Glycine max), 5'ss of exon 20
lower sequence: PP1S316_34V6.1 (Physcomitrella patens), 5'ss of exon 19
AATTTATACAAATCAGGGGGTTGCGATTTTGGCTTTGGCAGCAAATGCTGTTCACAAGCTTTGGAAATGGCAGAGAAATGAGCGGAACACTACTGGGAAGgtaa----tgagcatctatt--atacttggttgtgtgtacattttatcatgttaatgttcataagattgttaaaacaagtatttctta-tacag-------------------------------
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TATTTACACGAATGCAGGAGTTGCTCTGCTGGCACTAGCTTCGAATGCTGTGCACAAGCTTTGGAAATGGCAACGAAACGAGCGGAATATAAATGGAAAGgtgtgattttgttatttgtttcgtctttggttgcttttgggcactgcctattcatttggtctctagtctttggtataa-tattcctgaatactagtcttataattgtcttaattaaaattttcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|208207052|gb|GE008387.1|GE008387EST: TTCACAAGCTTTGGAAATGGCAGAGAAATGAGCGGAACACTACTGGGAAG GCCACTGCAAGTATTCAACCACAACTATGGCAACCATCTAGTGGAATACTG
genomic: TTCACAAGCTTTGGAAATGGCAGAGAAATGAGCGGAACACTACTGGGAAGgtaatgagca ... tcttatacagGCCACTGCAAGTATTCAACCACAACTATGGCAACCATCTAGTGGAATACTG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AATTTATACAAATCAGGGGGTTGCGATTTTGGCTTTGGCAGCAAATGCTGTTCACAAGCTTTGGAAATGGCAGAGAAATGAGCGGAACACTACTGGGAAGgtaatgagcatctattatacttggttgtgtgtacattttatcatgttaatgttcataagattgttaaaacaagtatttcttatacag
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