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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGAGGATGCTGTGTCATGTTTTGCACTGTCAAAGAATGACTCATATGTTATGTCTGCTTCAGGGGGGAAAATTTCTCTATTCAATATGATGACATTTAAGgtatgtcgtggctttcattttggatgttcttgtattctaataatttaggaaattattaagtaggtcatgttgctaattctttatttagaaagaatttatg...

Basic information

species Glycine max
transcript GLYMA17G12110.1
intron # 21
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G12110.2 (Glycine max), 5'ss of exon 21
lower sequence: Vv11s0016g05620.t01 (Vitis vinifera), 5'ss of exon 21
AGAGGATGCTGTGTCATGTTTTGCACTGTCAAAGAATGACTCATATGTTATGTCTGCTTCAGGGGGGAAAATTTCTCTATTCAATATGATGACATTTAAGgtatgtcgtggctttcattttggatgttcttgtattctaata-atttaggaaattattaagtaggtcatgttgctaattctttatttagaaagaatttatg---
 || ||||||||  |||| |||||||| ||||||||||| || ||||||||||| |||||||| |||||| | || |||||||| |||||||| || ||||||  |     |||    | || || ||  | | |    ||| ||||||   | |||||  |  |     |    ||  | | ||  |  ||  ||| |     
TGAAGATGCTGTTCCATGCTTTGCACTTTCAAAGAATGATTCCTATGTTATGTCAGCTTCAGGTGGGAAAGTCTCCCTATTCAACATGATGACCTTCAAGgtaaat---aacttctcctatgcatttttctctctagatatacatttagttcactattatttttggggaatcaa-aaggcatgatgaatgaaccattcaaccac

upper sequence: GLYMA17G12110.2 (Glycine max), 5'ss of exon 21
lower sequence: PP1S99_260V6.1 (Physcomitrella patens), 5'ss of exon 20
AGAGGATGCTGTGTCATGTTTTGCACTGTCAAAGAATGACTCATATGTTATGTCTGCTTCAGGGGGGAAAATTTCTCTATTCAATATGATGACATTTAAGgtatgtcgtggctttcattttggatgttcttgtattctaataatttaggaaattattaagtag-gtcatgttgctaattctttatttagaaag-aatttatg-------------------------------
 || ||||| ||| | ||  | || || || || || ||||| ||||| |||||||| || || |||||| ||||| | ||||| ||||||||||| ||||||      |    ||||   |  | |  || ||||||  |  | ||  ||  |  | || || ||  ||||  |  |  |||    ||     ||||| |                                
TGAAGATGCCGTGCCTTGCATAGCGCTCTCTAAAAACGACTCTTATGTGATGTCTGCGTCCGGAGGGAAAGTTTCTTTGTTCAACATGATGACATTCAAGgtaaagtccgcgaatcatgaggagtctattt-tattctt-tgttctaataatatggtgagaagcgttttgtttttggtaattttgacagttgtcaatttttattctgacgcttttcttcggattttgactcag

upper sequence: GLYMA17G12110.2 (Glycine max), 5'ss of exon 21
lower sequence: EFJ32018 (Selaginella moellendorffii), 5'ss of exon 20
AGAGGATGCTGTGTCATGTTTTGCACTGTCAAAGAATGACTCATATGTTATGTCTGCTTCAGGGGGGAAAATTTCTCTATTCAATATGATGACATTTAAGgtatgtcgtggctttcattttggatgttcttgtattctaataatttaggaaattattaagtaggtcatgttgctaattctttatttagaaagaatttatg
 || || |||||| | ||  ||||  |||||||||||||||| || || ||||| ||||| || || ||| |||||||||| ||||||||||| || ||||||||       || | | |||   | | |   |   |   |  |   |                                                   
GGAAGAAGCTGTGCCTTGCATTGCCTTGTCAAAGAATGACTCTTACGTGATGTCCGCTTCGGGAGGCAAAGTTTCTCTATTTAATATGATGACTTTCAAGgtatgcacatttttccttcttgaccggtgtaagaacttgccatgtccag---------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208162409|gb|GD963140.1|GD963140
EST:     AAAATTTCTCTATTCAATATGATGACATTTAAG                         ACAATGACAACTTTCATGCCACCTCCACCAGCTGCTACATTTCTTGCATTT
genomic: AAAATTTCTCTATTCAATATGATGACATTTAAGgtatgtcgtg ... tcaactgcagACAATGACAACTTTCATGCCACCTCCACCAGCTGCGACATTTCTTGCATTT
EST: gi|302141350|gb|HO212226.1|HO212226
EST:     AAATTTCTCTATTCAATATGATGACATTTAAG                         ACAATGACAACTTTCATGCCACCTCCACCAGCTGTGACATTTCTTGCATTT
genomic: AAATTTCTCTATTCAATATGATGACATTTAAGgtatgtcgtg ... tcaactgcagACAATGACAACTTTCATGCCACCTCCACCAGCTGCGACATTTCTTGCATTT
EST: gi|254332906|gb|GR850156.1|GR850156
EST:     TGTCTGCTTCAGGGGGGAAAATTTCTCTATTCAATATGATGACATTTAAG                         ACAATGACAACTTTCATGCCACCTCCACCAGCTGCGACATTTCTTGCATTT
genomic: TGTCTGCTTCAGGGGGGAAAATTTCTCTATTCAATATGATGACATTTAAGgtatgtcgtg ... tcaactgcagACAATGACAACTTTCATGCCACCTCCACCAGCTGCGACATTTCTTGCATTT