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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TACTCGGGTCCAATTTCATCTAGACCAGACACATTTACTGGCTGTTCATGAAACTCAAATAGCCTTATATGAGGCACCAAAGTTGGAATGTATAAAGCAGgtgtgctagttataaataatttaattgtcagctcaatttggctttcttcacttcaatgtcatcgatcaagcctgcaagcttaaccttgtgccgtgctttactttttgtatgatcag

Basic information

species Glycine max
transcript GLYMA17G12110.1
intron # 24
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G12110.2 (Glycine max), 5'ss of exon 24
lower sequence: Vv11s0016g05620.t01 (Vitis vinifera), 5'ss of exon 24
TACTCGGGTCCAATTTCATCTAGACCAGACACATTTACTGGCTGTTCATGAAACTCAAATAGCCTTATATGAGGCACCAAAGTTGGAATGTATAAAGCAGgtgtgctag-----ttataaataatttaat-tgtcagctcaatttggctttcttcacttcaatgtcatcgatcaagcctgcaagcttaaccttgtgccgtgctttactttttgtatgatcag--------------------------------------------------------
|||| |||| ||||||||||  || |||| |||||||||||| ||||||||||| || |||||| ||| ||||||| | ||  | || ||  | | |||||||||| ||     || |    | || | | |||   |     |  | |    | ||||  |  ||   | |    | |  | | ||    || | |  | ||||  |   |  |   |||                                                         
TACTAGGGTTCAATTTCATCACGATCAGATACATTTACTGGCAGTTCATGAAACGCAGATAGCCATATTTGAGGCATCCAAACTTGAGTGCCTTAGGCAGgtgtgccagattttttctgctcatttcagtatgtgtacatgcatatgttgatgttacttacagttcgaaggttttcctttaaggattgctgtttttc--tcctttgttgccttcacagtcaacaactctatttttctgttaaaactattgactttatgaaattatgttcctcaaatag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|17400966|gb|BM177748.1|BM177748
EST:     AAACTCAAATAGCCTTATATGAGGCATC-ACGTTGGAATGTATAAAGCAG                         TTTTCACCTCGGGAAGCCAATCCAATCACACATGCTACATACTCATGTGAT
genomic: AAACTCAAATAGCCTTATATGAGGCACCAAAGTTGGAATGTATAAAGCAGgtgtgctagt ... gtatgatcagTTTTCACCTCGGGAAGCCAATCCAATCACACATGCTACATACTCATGTGAT
EST: gi|16348877|gb|BI974472.1|BI974472
EST:     AAACTCAAATAGCCTTATATGAGGCACCAAAGTTGGAATGTATAAAGCAG                         TTTTCACCTCGGGAAGTCTTTTTCAATCACACATGCTACATACTCATGTGA
genomic: AAACTCAAATAGCCTTATATGAGGCACCAAAGTTGGAATGTATAAAGCAGgtgtgctagt ... gtatgatcagTTTTCACCTCGGGAAGCCAATC-CAATCACACATGCTACATACTCATGTGA
EST: gi|58018746|gb|CX705488.1|CX705488
EST:     AAACTCAAATAGCCTTATATGAGGCACCAAAGTTGGAATGTATAAAGCAG                         TTTTCACCTCGGGAAGCCAATCCAATCACACATGCTACATACTCATGTGAT
genomic: AAACTCAAATAGCCTTATATGAGGCACCAAAGTTGGAATGTATAAAGCAGgtgtgctagt ... gtatgatcagTTTTCACCTCGGGAAGCCAATCCAATCACACATGCTACATACTCATGTGAT
EST: gi|302141350|gb|HO212226.1|HO212226
EST:     AAACTCAAACAGCCTTATATGAGGCACCAAAGTTGGAATGTATAAAGCAG                         TTTTCACCTCGGGAAGCCAATCCAATCACACATGCTACATACTCATGTGAT
genomic: AAACTCAAATAGCCTTATATGAGGCACCAAAGTTGGAATGTATAAAGCAGgtgtgctagt ... gtatgatcagTTTTCACCTCGGGAAGCCAATCCAATCACACATGCTACATACTCATGTGAT
EST: gi|254332906|gb|GR850156.1|GR850156
EST:     AAACTCAAATAGCCTTATATGAGGCACCAAAGTTGGAATGTATAAAGCAG                         TTTTCACCTCGGGAAGCCAATCCAATCACACATGCTACATACTCATGTGAT
genomic: AAACTCAAATAGCCTTATATGAGGCACCAAAGTTGGAATGTATAAAGCAGgtgtgctagt ... gtatgatcagTTTTCACCTCGGGAAGCCAATCCAATCACACATGCTACATACTCATGTGAT