1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' | 24 5' 3' | 25 5' 3' |
gtaaagtgattgatattttgttaatcttttgcaagtacatcttctgaatccttcatgttaattcagGCACCTACTATTGGAGCTTTTCCTTCTACCAATGTAACTGTTGGAACAAGCCTTGCTGATAGAGCTCCTCCAGTAGCAGCCATGGTTGGGATT
species | Glycine max |
transcript | GLYMA17G12110.1 |
intron # | 17 |
splice site | 3' |
intron type | U2 |
EST: GATGCTTCTTAGAGTTGCTTCTGCAGCTGTTGTGAAG GCACCTACTATTGGAGCTTTTCCTTCTACCAATGTAACTGTTGGAACAAGCEST: gi|207768738|gb|GD740549.1|GD740549
genomic: GATGCTTC-TAGAGTTGCTTCTGCAGCTGTTGTGAAGgtaaagtgat ... gttaattcagGCACCTACTATTGGAGCTTTTCCTTCTACCAATGTAACTGTTGGAACAAGC
EST: AAAATCGTACATTTGATGCTTCTAGAGTTGCTTCTGCAGCTGTTGTGAAG GCACCTACTATTGGAGCTTTTEST: gi|254315741|gb|GR825550.1|GR825550
genomic: AAAATCGTACATTTGATGCTTCTAGAGTTGCTTCTGCAGCTGTTGTGAAGgtaaagtgat ... gttaattcagGCACCTACTATTGGAGCTTTT
EST: AAAATCGTACATTTGATGTTTCTAGAGTTGCTTCTGCAGCTGTTGTGAAG GCACCTACTATTGGAGCTTTTCCTTCTACCAATGTAACTGTTGGAACAAGC
genomic: AAAATCGTACATTTGATGCTTCTAGAGTTGCTTCTGCAGCTGTTGTGAAGgtaaagtgat ... gttaattcagGCACCTACTATTGGAGCTTTTCCTTCTACCAATGTAACTGTTGGAACAAGC
gatattttgttaatcttttgcaagtacatcttctgaatccttcatgttaattcagGCACCTACTATTGGAGCTTTTCCTTCTACCAATGTAACTGTTGGAACAAGCCTTGCTGATAGAGCTCCTCCAGTAGCAGCCATGGTTGGGATT
tgttaat putative branch site (score: 3)
tttgttaatctttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaagtgattgatattttgttaatcttttgcaagtacatcttctgaatccttcatgttaattcagGCACCTACTATTGGAGCTTTTCCTTCTACCAATGTAACTGTTGGAACAAGCCTTGCTGATAGAGCTCCTCCAGTAGCAGCCATGGTTGGGATT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC