1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtaaattaaacaaaccatatctaaaatccttcttgaatatgattatgtcaaagatgtcttgtcatataggttttaattctatccttggtcatgcagGTTTTTGGATCCACAGCCAGAATATTCTGCTTTTCGAGAAGCAAGCTACGGACATTCCACACTGGAGATAAAAAATAGGACCCATGCTATCTACCACTGG
species | Glycine max |
transcript | GLYMA17G11790.2 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: GTTTACATAACAGTCGGAGATGGTGGAAATCAAGAAGGTCTTGCTTCAAG GTTTTTGGATCCACAGCCAGAATATTCTGCTTTTCGAGAAGCAAGCTACGGEST: gi|209728181|gb|BW651616.1|BW651616
genomic: GTTTACATAACAGTCGGAGATGGTGGAAATCAAGAAGGTCTTGCTTCAAGgtaaattaaa ... ggtcatgcagGTTTTTGGATCCACAGCCAGAATATTCTGCTTTTCGAGAAGCAAGCTACGG
EST: GTTTACATAACAGTCGGAGATGGTGGAAATCAAGAAGGTCTTGCTTCAAG GTTTTTGGATCCACAGCCAGAATATTCTGCTTTTCGAGAAGCAAGCTACGGEST: gi|193681333|gb|FK624469.1|FK624469
genomic: GTTTACATAACAGTCGGAGATGGTGGAAATCAAGAAGGTCTTGCTTCAAGgtaaattaaa ... ggtcatgcagGTTTTTGGATCCACAGCCAGAATATTCTGCTTTTCGAGAAGCAAGCTACGG
EST: AAGAAGGTCTTGCTTCAAG GTTTTTGGATCCACAGCCAGAATATTCTGCTTTTCGAGAAGCAAGCTACGGEST: gi|193392304|gb|FK360129.1|FK360129
genomic: AAGAAGGTCTTGCTTCAAGgtaaattaaa ... ggtcatgcagGTTTTTGGATCCACAGCCAGAATATTCTGCTTTTCGAGAAGCAAGCTACGG
EST: GTTTACATAACAGTCGGAGATGGTGGAAATCAAGAAGGTCTTGCTTCAAG GTTTTTGGATCCACAGCCAGAATATTCTGCTTTTCGAGAAGCAAGCTACGGEST: gi|151399107|gb|EV268978.1|EV268978
genomic: GTTTACATAACAGTCGGAGATGGTGGAAATCAAGAAGGTCTTGCTTCAAGgtaaattaaa ... ggtcatgcagGTTTTTGGATCCACAGCCAGAATATTCTGCTTTTCGAGAAGCAAGCTACGG
EST: GTTTACATAACAGTCGGAGATGGTGGAAATCAAGAAGGTCTTGCTTCAAG GTTTTTGGATCCACAGCCAGAATATTCTGCTTTTCGAGAAGCAAGCTACGGEST: gi|208316365|gb|GE114049.1|GE114049
genomic: GTTTACATAACAGTCGGAGATGGTGGAAATCAAGAAGGTCTTGCTTCAAGgtaaattaaa ... ggtcatgcagGTTTTTGGATCCACAGCCAGAATATTCTGCTTTTCGAGAAGCAAGCTACGG
EST: AGAAGGCCTTGCTTCAAG GTTTTTGGATCCACAGCCAGAATATTCTGCTTTTCGAGAAGCAAGCTACGGEST: gi|193463690|gb|FK426522.1|FK426522
genomic: AGAAGGTCTTGCTTCAAGgtaaattaaa ... ggtcatgcagGTTTTTGGATCCACAGCCAGAATATTCTGCTTTTCGAGAAGCAAGCTACGG
EST: GTTTACATAACAGTCGGAGATGGTGGAAATCAAGAAGGTCTTGCTTCAAG GTTTTTGGATCCACAGCCAGAATATTCTGCTTTTCGAGAAGCAAGCTACGGEST: gi|193332504|gb|FK301622.1|FK301622
genomic: GTTTACATAACAGTCGGAGATGGTGGAAATCAAGAAGGTCTTGCTTCAAGgtaaattaaa ... ggtcatgcagGTTTTTGGATCCACAGCCAGAATATTCTGCTTTTCGAGAAGCAAGCTACGG
EST: ATGGTGGAAATCAAGAAGGTCTTGCTTCAAG GTTTTTGGATCCACAGCCAGAATATTCTGCTTTTCGAGAAGCAAGCTACGG
genomic: ATGGTGGAAATCAAGAAGGTCTTGCTTCAAGgtaaattaaa ... ggtcatgcagGTTTTTGGATCCACAGCCAGAATATTCTGCTTTTCGAGAAGCAAGCTACGG
attatgtcaaagatgtcttgtcatataggttttaattctatccttggtcatgcagGTTTTTGGATCCACAGCCAGAATATTCTGCTTTTCGAGAAGCAAGCTACGGACATTCCACACTGGAGATAAAAAATAGGACCCATGCTATCTACCACTGG
ttttaat putative branch site (score: 3)
atataggttttaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaattaaacaaaccatatctaaaatccttcttgaatatgattatgtcaaagatgtcttgtcatataggttttaattctatccttggtcatgcagGTTTTTGGATCCACAGCCAGAATATTCTGCTTTTCGAGAAGCAAGCTACGGACATTCCACACTGGAGATAAAAAATAGGACCCATGCTATCTACCACTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT