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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...acagaacaatagagttttaccttgaaataagtcatttagatgcagtttacttcaaaatatgtttagtatgaatgacattcattgagattcgtaaacgcagATGGTTAGGACTCTGTAGGCTGATAAAGACAACACTCATACCGTTGGAAAGAAGGATGCTGCTGGCCATGTTGCTTAATTTAGTTCTTGCTTCCTTTGTC

Basic information

species Glycine max
transcript GLYMA17G11790.2
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213599932|gb|DB966448.1|DB966448
EST:     ATGTGGTTGGCTTCCTTTCGCTCTCTTCTCTGCAAATGCTTCATTCCAAG                         ATGGTTAGGACTCTGTAGGCTGATAAAGACAACACTCATACCGTTGGAAAG
genomic: ATGTGGTTGGCTTCCTTTCGCTCTCTTCTCTGCAAATGCTTCATTCCAAGgtatgcttcc ... gtaaacgcagATGGTTAGGACTCTGTAGGCTGATAAAGACAACACTCATACCGTTGGAAAG
EST: gi|213602625|gb|DB956589.1|DB956589
EST:     ATGTGGTTGGCTTCCTTTCGCTCTCTTCTCTGCAAATGCTTCATTCCAAG                         ATGGTTAGGACTCTGTAGGCTGATAAAGACAACACTCATACCGTTGGAAAG
genomic: ATGTGGTTGGCTTCCTTTCGCTCTCTTCTCTGCAAATGCTTCATTCCAAGgtatgcttcc ... gtaaacgcagATGGTTAGGACTCTGTAGGCTGATAAAGACAACACTCATACCGTTGGAAAG
EST: gi|209712757|gb|BW681611.1|BW681611
EST:     ATGTGGTTGGCTTCCTTTCGCTCTCTTCTCTGCAAATGCTTCATTCCAAG                         ATGGTTAGGACTCTGTAGGCTGATAAAGACAACACTCATACCGTTGGAAAG
genomic: ATGTGGTTGGCTTCCTTTCGCTCTCTTCTCTGCAAATGCTTCATTCCAAGgtatgcttcc ... gtaaacgcagATGGTTAGGACTCTGTAGGCTGATAAAGACAACACTCATACCGTTGGAAAG
EST: gi|213618106|gb|DB965263.1|DB965263
EST:     ATGTGGTTGGCTTCCTTTCGCTCTCTTCTCTGCAAATGCTTCATTCCAAG                         ATGGTTAGGACTCTGTAGGCTGATAAAGACAACACTCATACCGTTGGAAAG
genomic: ATGTGGTTGGCTTCCTTTCGCTCTCTTCTCTGCAAATGCTTCATTCCAAGgtatgcttcc ... gtaaacgcagATGGTTAGGACTCTGTAGGCTGATAAAGACAACACTCATACCGTTGGAAAG
EST: gi|209701994|gb|BW670531.1|BW670531
EST:     GGTTGGCTTCCTTTCGCTCTCTTCTCTGCAAATGCTTCATTCCAAG                         ATGGTTAGGACTCTGTAGGCTGATAAAGACAACACTCATACCGTTGGAAAG
genomic: GGTTGGCTTCCTTTCGCTCTCTTCTCTGCAAATGCTTCATTCCAAGgtatgcttcc ... gtaaacgcagATGGTTAGGACTCTGTAGGCTGATAAAGACAACACTCATACCGTTGGAAAG
EST: gi|207847611|gb|GD819210.1|GD819210
EST:     CTTCTCTGCAAATAGCTTCATTCCAAG                         ATGGTTAGGACTCTGTAGGCTGATAAAGACAACACTCATACCGTTGGAAAG
genomic: CTTCTCTGCAAAT-GCTTCATTCCAAGgtatgcttcc ... gtaaacgcagATGGTTAGGACTCTGTAGGCTGATAAAGACAACACTCATACCGTTGGAAAG
EST: gi|213604561|gb|DB966648.1|DB966648
EST:     ATGTGGTTGGCTTCCTTTCGCTCTCTTCTCTGCAAATGCTTCATTCCAAG                         ATGGTTAGGACTCTGTAGGCTGATAAAGACAACACTCATACCGTTGGAAAG
genomic: ATGTGGTTGGCTTCCTTTCGCTCTCTTCTCTGCAAATGCTTCATTCCAAGgtatgcttcc ... gtaaacgcagATGGTTAGGACTCTGTAGGCTGATAAAGACAACACTCATACCGTTGGAAAG
EST: gi|209706576|gb|BW667829.1|BW667829
EST:     ATGTGGTTGGCTTCCTTTCGCTCTCTTCTCTGCAAATGCTTCATTCCAAG                         ATGGTTAGGACTCTGTAGGCTGATAAAGACAACACTCATACCGTTGGAAAG
genomic: ATGTGGTTGGCTTCCTTTCGCTCTCTTCTCTGCAAATGCTTCATTCCAAGgtatgcttcc ... gtaaacgcagATGGTTAGGACTCTGTAGGCTGATAAAGACAACACTCATACCGTTGGAAAG
EST: gi|23726031|gb|BU760993.1|BU760993
EST:     AAATGCTTCATTCCAAG                         ATGGTTAGGACTCTGTAGGCTGATAAAGACAACACTCATACCGTTGGAAAG
genomic: AAATGCTTCATTCCAAGgtatgcttcc ... gtaaacgcagATGGTTAGGACTCTGTAGGCTGATAAAGACAACACTCATACCGTTGGAAAG
EST: gi|192311754|gb|FK003587.1|FK003587
EST:     TCTTCTCTGCAAATGCTTCATTCCAAG                         ATGGTTAGGACTCTGTAGGCTGATAAAGACAACACTCATACCGTTGGAAAG
genomic: TCTTCTCTGCAAATGCTTCATTCCAAGgtatgcttcc ... gtaaacgcagATGGTTAGGACTCTGTAGGCTGATAAAGACAACACTCATACCGTTGGAAAG
EST: gi|254344611|gb|GR855482.1|GR855482
EST:     ATGTGGTTGGCTTCCTTTCGCTCTCTTCTCTGCAAATGCTTCATTCCAAG                         ATGGTTAGGACTCTGTAGGCTGATAAAGACAACACTCATACCGTTGGAAAG
genomic: ATGTGGTTGGCTTCCTTTCGCTCTCTTCTCTGCAAATGCTTCATTCCAAGgtatgcttcc ... gtaaacgcagATGGTTAGGACTCTGTAGGCTGATAAAGACAACACTCATACCGTTGGAAAG
EST: gi|192299966|gb|FG991812.1|FG991812
EST:     GTGGTTGGCTTCCTTTCGCTCTCTTCTCTGCAAATGCTTCATTCCAAG                         ATGGTTAGGACTCTGTAGGCTGATAAAGACAACACTCATACCGTTGGAAAG
genomic: GTGGTTGGCTTCCTTTCGCTCTCTTCTCTGCAAATGCTTCATTCCAAGgtatgcttcc ... gtaaacgcagATGGTTAGGACTCTGTAGGCTGATAAAGACAACACTCATACCGTTGGAAAG
EST: gi|207751094|gb|GD726181.1|GD726181
EST:     ATGTGGTTGGCTTCCTTTCGCTCTCTTCTCTGCAAATGCTTCATTCCAAG                         ATGGTTAGGACTCTGTAGGCTGATAAAGACAACACTCATACCGTTGGAAAG
genomic: ATGTGGTTGGCTTCCTTTCGCTCTCTTCTCTGCAAATGCTTCATTCCAAGgtatgcttcc ... gtaaacgcagATGGTTAGGACTCTGTAGGCTGATAAAGACAACACTCATACCGTTGGAAAG
EST: gi|209705502|gb|BW673523.1|BW673523
EST:     ATGTGGTTGGCTTCCTTTCGCTCTCTTCTCTGCAAATGCTTCATTCCAAG                         ATGGTTAGGACTCTGTAGGCTGATAAAGACAACACTCATACCGTTGGAAAG
genomic: ATGTGGTTGGCTTCCTTTCGCTCTCTTCTCTGCAAATGCTTCATTCCAAGgtatgcttcc ... gtaaacgcagATGGTTAGGACTCTGTAGGCTGATAAAGACAACACTCATACCGTTGGAAAG
EST: gi|120530447|gb|EH258580.1|EH258580
EST:     TGGTTGGCTTCCTTTCGCTCTCTTCTCTGCAAATGCTTCATTCCAAG                         ATGGTTAGGACTCTGTAGGCTGATAAAGACAACACTCATACCGTTGGAAAG
genomic: TGGTTGGCTTCCTTTCGCTCTCTTCTCTGCAAATGCTTCATTCCAAGgtatgcttcc ... gtaaacgcagATGGTTAGGACTCTGTAGGCTGATAAAGACAACACTCATACCGTTGGAAAG
EST: gi|254343421|gb|GR857125.1|GR857125
EST:     CTTCCTTTCGCTCTCTTCTCTGCAAATGCTTCATTCCAAG                         ATGGTTAGGACTCTGTAGGCTGATAAAGACAACACTCATACCGTTGGAAAG
genomic: CTTCCTTTCGCTCTCTTCTCTGCAAATGCTTCATTCCAAGgtatgcttcc ... gtaaacgcagATGGTTAGGACTCTGTAGGCTGATAAAGACAACACTCATACCGTTGGAAAG
EST: gi|193330815|gb|FK293745.1|FK293745
EST:     ATGTGGTTGGCTTCCTTTCGCTCTCTTCTCTGCAAATGCTTCATTCCAAG                         ATGGTTAGGACTCTGTAGGCTGATAAAGACAACACTCATACCGTTGGAAAG
genomic: ATGTGGTTGGCTTCCTTTCGCTCTCTTCTCTGCAAATGCTTCATTCCAAGgtatgcttcc ... gtaaacgcagATGGTTAGGACTCTGTAGGCTGATAAAGACAACACTCATACCGTTGGAAAG
EST: gi|213596260|gb|DB960217.1|DB960217
EST:     ATGTGGTTGGCTTCCTTTCGCTCTCTTCTCTGCAAATGCTTCATTCCAAG                         ATGGTTAGGACTCTGTAGGCTGATAAAGACAACACTCATACCGTTGGAAAG
genomic: ATGTGGTTGGCTTCCTTTCGCTCTCTTCTCTGCAAATGCTTCATTCCAAGgtatgcttcc ... gtaaacgcagATGGTTAGGACTCTGTAGGCTGATAAAGACAACACTCATACCGTTGGAAAG
EST: gi|209728180|gb|BW651615.1|BW651615
EST:     ATGTGGTTGGCTTCCTTTCGCTCTCTTCTCTGCAAATGCTTCATTCCAAG                         ATGGTTAGGACTCTGTAGGCTGATAAAGACAACACTCATACCGTTGGAAAG
genomic: ATGTGGTTGGCTTCCTTTCGCTCTCTTCTCTGCAAATGCTTCATTCCAAGgtatgcttcc ... gtaaacgcagATGGTTAGGACTCTGTAGGCTGATAAAGACAACACTCATACCGTTGGAAAG
EST: gi|192311725|gb|FK003586.1|FK003586
EST:     ATGTGGTTGGCTTCCTTTCGCTCTCTTCTCTGCAAATGCTTCATTCCAAG                         ATGGTTAGGACTCTGTAGGCTGATAAAGACAACACTCATACCGTTGGAAAG
genomic: ATGTGGTTGGCTTCCTTTCGCTCTCTTCTCTGCAAATGCTTCATTCCAAGgtatgcttcc ... gtaaacgcagATGGTTAGGACTCTGTAGGCTGATAAAGACAACACTCATACCGTTGGAAAG
EST: gi|193378993|gb|FK344327.1|FK344327
EST:     ATGTGGTTGGCTTCCTTTCGCTCTCTTCTCTGCAAATGCTTCATTCCAAG                         ATGGTTAGGACTCTGTAGGCTGATAAAGACAACACTCATACCGTTGGAAAG
genomic: ATGTGGTTGGCTTCCTTTCGCTCTCTTCTCTGCAAATGCTTCATTCCAAGgtatgcttcc ... gtaaacgcagATGGTTAGGACTCTGTAGGCTGATAAAGACAACACTCATACCGTTGGAAAG
EST: gi|209714892|gb|BW682057.1|BW682057
EST:     ATGTGGTTGGCTTCCTTTCGCTCTCTTCTCTGCAAATGCTTCATTCCAAG                         ATGGTTAGGACTCTGTAGGCTGATAAAGACAACACTCATACCGTTGGAAAG
genomic: ATGTGGTTGGCTTCCTTTCGCTCTCTTCTCTGCAAATGCTTCATTCCAAGgtatgcttcc ... gtaaacgcagATGGTTAGGACTCTGTAGGCTGATAAAGACAACACTCATACCGTTGGAAAG
EST: gi|8827970|gb|BE211700.1|BE211700
EST:     CTTCTCTGCAAATGCTTCATTCCAAG                         ATGGTTAGGACTCTGTAGGCTGATAAAGACAACACTCATACCGTTGGAAAG
genomic: CTTCTCTGCAAATGCTTCATTCCAAGgtatgcttcc ... gtaaacgcagATGGTTAGGACTCTGTAGGCTGATAAAGACAACACTCATACCGTTGGAAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttacttcaaaatatgtttagtatgaatgacattcattgagattcgtaaacgcagATGGTTAGGACTCTGTAGGCTGATAAAGACAACACTCATACCGTTGGAAAGAAGGATGCTGCTGGCCATGTTGCTTAATTTAGTTCTTGCTTCCTTTGTC
        aaaatatgtttagtat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
acagaacaatagagttttaccttgaaataagtcatttagatgcagtttacttcaaaatatgtttagtatgaatgacattcattgagattcgtaaacgcagATGGTTAGGACTCTGTAGGCTGATAAAGACAACACTCATACCGTTGGAAAGAAGGATGCTGCTGGCCATGTTGCTTAATTTAGTTCTTGCTTCCTTTGTC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGCT