1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...atgcttgtcaactgccacattttgttgtgtatttggtcttttgaaaattttctctgtttccttttatggtatttttcgtaatagttatctttcataacagTGAAATACACTCCTCAATACATGTGGCTTAAAGAAGAGCTGAAGCGAGTTGAGAGGGAGAAGACTCCTTGGCTCATTGTGCTCATGCACGTGCCGCTCTA
species | Glycine max |
transcript | GLYMA17G11790.2 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CAGGCGTGCGTCTGCTCATATAATTGTGCTATCCAGCTATTCACCATTCG TGAAATACACTCCTCAATACATGTGGCTTAAAGAAGEST: gi|6483125|gb|AW202317.1|AW202317
genomic: CAGGCGTGCGTCTGCTCATATAATTGTGCTATCCAGCTATTCACCATTCGgtaattaatc ... ttcataacagTGAAATACACTCCTCAATACATGTGGCTTAAAGAAG
EST: CAGGCGTGCGTCTGCTCATATAATTGTGCTATCCAGCTATTCACCATTCG TGAAATACACTCCTCAATACATGTGGCTTAAAGAAGAGCTGAAGCGAGTTGEST: gi|10843254|gb|BF066562.1|BF066562
genomic: CAGGCGTGCGTCTGCTCATATAATTGTGCTATCCAGCTATTCACCATTCGgtaattaatc ... ttcataacagTGAAATACACTCCTCAATACATGTGGCTTAAAGAAGAGCTGAAGCGAGTTG
EST: CAGGCGTGCGTCTGCTCATATAATTGTGCTATCCAGCTATTCACCATTCG TGAAATACACTCCTCAATACATGTGGCTTAAAGAAGAGCTGAAGCGAGTTGEST: gi|7690913|gb|AW759049.1|AW759049
genomic: CAGGCGTGCGTCTGCTCATATAATTGTGCTATCCAGCTATTCACCATTCGgtaattaatc ... ttcataacagTGAAATACACTCCTCAATACATGTGGCTTAAAGAAGAGCTGAAGCGAGTTG
EST: CAGGCGTGCGTCTGCTCATATAATTGTGCTATCCAGCTATTCACCATTCG TGAAATACACTCCTCAATACATGTGGCTTAAAGAAGAGCTGAAGCGAGTTGEST: gi|14011825|gb|BG726747.1|BG726747
genomic: CAGGCGTGCGTCTGCTCATATAATTGTGCTATCCAGCTATTCACCATTCGgtaattaatc ... ttcataacagTGAAATACACTCCTCAATACATGTGGCTTAAAGAAGAGCTGAAGCGAGTTG
EST: CAGGCGTTCGTCTGCTCATATAATTGTTTTATTCAGCTATTCACCATTCG TGAAATACACTCCTCAATACATGTGGCTTAAAGAAGAGCTGAAGCGAGTTGEST: gi|207835765|gb|GD806504.1|GD806504
genomic: CAGGCGTGCGTCTGCTCATATAATTGTGCTATCCAGCTATTCACCATTCGgtaattaatc ... ttcataacagTGAAATACACTCCTCAATACATGTGGCTTAAAGAAGAGCTGAAGCGAGTTG
EST: CAGGCGTGCGTCTGCTCATATAATTGTGCTATCCAGCTATTCACCATTCG TGAAATACACTCCTCAATACATGTGGCTTAAAGAAGAGCTGAAGCGAGTTGEST: gi|193635387|gb|FK584782.1|FK584782
genomic: CAGGCGTGCGTCTGCTCATATAATTGTGCTATCCAGCTATTCACCATTCGgtaattaatc ... ttcataacagTGAAATACACTCCTCAATACATGTGGCTTAAAGAAGAGCTGAAGCGAGTTG
EST: CAGGCGTGCGTCTGCTCATATAATTGTGCTATCCAGCTATTCACCATTCG TGAAATACACTCCTCAATACATGTGGCTTAAAGAAGAGCTGAAGCGAGTTGEST: gi|6727109|gb|AW311463.1|AW311463
genomic: CAGGCGTGCGTCTGCTCATATAATTGTGCTATCCAGCTATTCACCATTCGgtaattaatc ... ttcataacagTGAAATACACTCCTCAATACATGTGGCTTAAAGAAGAGCTGAAGCGAGTTG
EST: CACGCGTGCGTCTGCTCATATAATCGTGCTATCCAGCTATTCACCATTCG TGATATACACTCCTCAATACATGTAGCTTAAAGAAGAGCTGAAGCGAGTTEST: gi|207759295|gb|GD731750.1|GD731750
genomic: CAGGCGTGCGTCTGCTCATATAATTGTGCTATCCAGCTATTCACCATTCGgtaattaatc ... ttcataacagTGAAATACACTCCTCAATACATGTGGCTTAAAGAAGAGCTGAAGCGAGTT
EST: CAGGCGTGCGTCTGCTCATATAATTGTGCTATCCAGCTATTCACCATTCG TGAAATACACTCCTCAATACATGTGGCTTAAAGAAGAGCTGAAGCGAGTTGEST: gi|193384819|gb|FK353177.1|FK353177
genomic: CAGGCGTGCGTCTGCTCATATAATTGTGCTATCCAGCTATTCACCATTCGgtaattaatc ... ttcataacagTGAAATACACTCCTCAATACATGTGGCTTAAAGAAGAGCTGAAGCGAGTTG
EST: CATATAATTGTGCTATCCAGCTATTCACCATTCG TGAAATACACTCCTCAATACATGTGGCTTAAAGAAGAGCTGAAGCGAGTTGEST: gi|308098822|gb|HO760663.1|HO760663
genomic: CATATAATTGTGCTATCCAGCTATTCACCATTCGgtaattaatc ... ttcataacagTGAAATACACTCCTCAATACATGTGGCTTAAAGAAGAGCTGAAGCGAGTTG
EST: CAGGCGTGCGTCTGCTCATATAATTGTGCTATCCAGCTATTCACCATTTG TGAAATACACTCCTCAATACATGTGGCTTAAAGAAGAGCTGAAGCGAGTTGEST: gi|208339496|gb|GE133560.1|GE133560
genomic: CAGGCGTGCGTCTGCTCATATAATTGTGCTATCCAGCTATTCACCATTCGgtaattaatc ... ttcataacagTGAAATACACTCCTCAATACATGTGGCTTAAAGAAGAGCTGAAGCGAGTTG
EST: CAGGCGTGCGTCTGCTCATATAATTGTGCTATCCAGCTATTCACCATTCG TGAAATACACTCCTCAATACATGTGGCTTAAAGAAGAGCTGAAGCGAGTTG
genomic: CAGGCGTGCGTCTGCTCATATAATTGTGCTATCCAGCTATTCACCATTCGgtaattaatc ... ttcataacagTGAAATACACTCCTCAATACATGTGGCTTAAAGAAGAGCTGAAGCGAGTTG
aattttctctgtttccttttatggtatttttcgtaatagttatctttcataacagTGAAATACACTCCTCAATACATGTGGCTTAAAGAAGAGCTGAAGCGAGTTGAGAGGGAGAAGACTCCTTGGCTCATTGTGCTCATGCACGTGCCGCTCTA
ttatctttc CT-rich tract
ttttatggtattttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atgcttgtcaactgccacattttgttgtgtatttggtcttttgaaaattttctctgtttccttttatggtatttttcgtaatagttatctttcataacagTGAAATACACTCCTCAATACATGTGGCTTAAAGAAGAGCTGAAGCGAGTTGAGAGGGAGAAGACTCCTTGGCTCATTGTGCTCATGCACGTGCCGCTCTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA