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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtctttagaagagtaacaaggctgattttattatctattcgctaatagtatttaatgaaactttgacaaggatcctactcctcggaaaccaaattggacatgtgaagcagtttcaagttctaaatctattcctttattccaatgaagctcagctgcattgattgattcctctgtagGTGCACATCACGCAAGGTGACTATGATGGAAAAGCAGTAATCATCTCATGGGTGACCACAGAAGAGCCAGGGCACAGCCATATACAGTATGGCACATCAG

Basic information

species Glycine max
transcript GLYMA17G11790.2
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G11790.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv04s0008g06520.t01 (Vitis vinifera), 3'ss of exon 2
gtaagtctttagaagagtaacaaggctgattttattatctattcgctaatagtatttaatgaaactttgacaaggatcctactcctcggaaaccaaattggacatgtgaagcagtttcaagttctaaatctattcctttattccaatgaagctcagctgcattgattgattcctctgtagGTGCACATCACGCAAGGTGACTATGATGGAAAAGCAGTAATCATCTCATGGGTGACCACAGAAGAGCCAGGGCACAGCCATATACAGTATGGCACATCAG
                                                                         | ||  |  |  |  || |   | |      ||  |   ||| |||     | || | |    || | |  |||     |       |||   |  |||   |||||||||| ||||| |||||||||||||| ||||| || || || ||  | ||||| || || || || ||||||   ||  |  | |  || |||||||  |
----------------------------------------------------------------------ttggaatattttttttttgataaatattcttttttggaatatagtatcag----tgaaacaaccttttcagtttaat----tttgatgttatta--tatttctcatgtagGTGCATATCACCCAAGGTGACTATGACGGAAAGGCTGTCATAATTACGTGGGTTACAACTGATGAACCAGGGTCAAGTAAAGTGCTATACGGCACATTGG

upper sequence: GLYMA17G11790.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv11s0118g00240.t01 (Vitis vinifera), 3'ss of exon 2
gtaagtctttagaagagtaacaaggctgattttattatctattcgctaatagtatttaatgaaactttgacaaggatcctactcctcggaaaccaaattggacatgtgaagcagtttcaagttctaaatctattcctttattccaatgaagctcagctgcattgattgattcctctgtagGTGCACATCACGCAAGGTGACTATGATGGAAAAGCAGTAATCATCTCATGGGTGACCACAGAAGAGCCAGGGCACAGCCATATACAGTATGGCACATCAG
                                                                || | |     ||  |    ||    |  ||| |   |||| |    |||| |     |||    ||| |||| | | |   |||       || | ||||   ||||   | |||||||| ||||| |||||||||||||||||||| || || ||| |||| ||||| || || || || ||||||| |||| |  |||| |||||||||||||
----------------------------------------------------------------ctattattgatattgtgtcactatttattcaagt---acatatt---cagtgttgtaatctg--cctactcctatttccttttga-------ctac-ttgaaacattctgttctagGTGCATATCACCCAAGGTGACTATGATGGAAAGGCTGTCATCGTCTCTTGGGTTACAACTGATGAACCAGGGCCCAGCAAAGTACAATATGGCACATCAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213602625|gb|DB956589.1|DB956589
EST:     TTGATCATGAAGCATTTGCAGTTCCAAAGGGTTATAATGCACCTCAACAA                         GTGCACATCACGCAAGGTGACTATGATGGAAAAGCAGTAATCATCTCATGG
genomic: TTGATCATGAAGCATTTGCAGTTCCAAAGGGTTATAATGCACCTCAACAAgtaagtcttt ... tcctctgtagGTGCACATCACGCAAGGTGACTATGATGGAAAAGCAGTAATCATCTCATGG
EST: gi|209712757|gb|BW681611.1|BW681611
EST:     TTGATCATGAAGCATTTGCAGTTCCAAAGGGTTATAATGCACCTCAACAA                         GTGCACATCACGCAAGGTGACTATGATGGAAAAGCAGTAATCATCTCATGG
genomic: TTGATCATGAAGCATTTGCAGTTCCAAAGGGTTATAATGCACCTCAACAAgtaagtcttt ... tcctctgtagGTGCACATCACGCAAGGTGACTATGATGGAAAAGCAGTAATCATCTCATGG
EST: gi|213618106|gb|DB965263.1|DB965263
EST:     TTGATCATGAAGCATTTGCAGTTCCAAAGGGTTATAATGCACCTCAACAA                         GTGCACATCACGCAAGGTGACTATGATGGAAAAGCAGTAATCATCTCATGG
genomic: TTGATCATGAAGCATTTGCAGTTCCAAAGGGTTATAATGCACCTCAACAAgtaagtcttt ... tcctctgtagGTGCACATCACGCAAGGTGACTATGATGGAAAAGCAGTAATCATCTCATGG
EST: gi|209701994|gb|BW670531.1|BW670531
EST:     TTGATCATGAAGCATTTGCAGTTCCAAAGGGTTATAATGCACCTCAACAA                         GTGCACATCACGCAAGGTGACTATGATGGAAAAGCAGTAATCATCTCATGG
genomic: TTGATCATGAAGCATTTGCAGTTCCAAAGGGTTATAATGCACCTCAACAAgtaagtcttt ... tcctctgtagGTGCACATCACGCAAGGTGACTATGATGGAAAAGCAGTAATCATCTCATGG
EST: gi|151407026|gb|EV276841.1|EV276841
EST:     ATGAAGCATTTGCAGTTCCAAAGGGTTATAATGCACCTCAACAA                         GTGCACATCACGCAAGGTGACTATGATGGAAAAGCAGTAATCATCTCATGG
genomic: ATGAAGCATTTGCAGTTCCAAAGGGTTATAATGCACCTCAACAAgtaagtcttt ... tcctctgtagGTGCACATCACGCAAGGTGACTATGATGGAAAAGCAGTAATCATCTCATGG
EST: gi|213604561|gb|DB966648.1|DB966648
EST:     TTGATCATGAAGCATTTGCAGTTCCAAAGGGTTATAATGCACCTCAACAA                         GTGCACATCACGCAAGGTGACTATGATGGAAAAGCAGTAATCATCTCATGG
genomic: TTGATCATGAAGCATTTGCAGTTCCAAAGGGTTATAATGCACCTCAACAAgtaagtcttt ... tcctctgtagGTGCACATCACGCAAGGTGACTATGATGGAAAAGCAGTAATCATCTCATGG
EST: gi|209706576|gb|BW667829.1|BW667829
EST:     TTGATCATGAAGCATTTGCAGTTCCAAAGGGTTATAATGCACCTCAACAA                         GTGCACATCACGCAAGGTGACTATGATGGAAAAGCAGTAATCATCTCATGG
genomic: TTGATCATGAAGCATTTGCAGTTCCAAAGGGTTATAATGCACCTCAACAAgtaagtcttt ... tcctctgtagGTGCACATCACGCAAGGTGACTATGATGGAAAAGCAGTAATCATCTCATGG
EST: gi|208152457|gb|GD945208.1|GD945208
EST:     TTGATCATGAAGCATTTGCAGTTCCAAAGGGTTATAATGCACCTCAACAA                         GTGCACATCACGCAAGGTGACTATGATGGAAAAGCAGTAATCATCTCATGG
genomic: TTGATCATGAAGCATTTGCAGTTCCAAAGGGTTATAATGCACCTCAACAAgtaagtcttt ... tcctctgtagGTGCACATCACGCAAGGTGACTATGATGGAAAAGCAGTAATCATCTCATGG
EST: gi|23726031|gb|BU760993.1|BU760993
EST:     TTGATCATGAAGCATTTGCAGTTCCAAAGGGTTATAATGCACCTCAACAA                         GTGCACATCACGCAAGGTGACTATGATGGAAAAGCAGTAATCATCTCATGG
genomic: TTGATCATGAAGCATTTGCAGTTCCAAAGGGTTATAATGCACCTCAACAAgtaagtcttt ... tcctctgtagGTGCACATCACGCAAGGTGACTATGATGGAAAAGCAGTAATCATCTCATGG
EST: gi|192311754|gb|FK003587.1|FK003587
EST:     TTGATCATGAAGCATTTGCAGTTCCAAAGGGTTATAATGCACCTCAACAA                         GTGCACATCACGCAAGGTGACTATGATGGAAAAGCAGTAATCATCTCATGG
genomic: TTGATCATGAAGCATTTGCAGTTCCAAAGGGTTATAATGCACCTCAACAAgtaagtcttt ... tcctctgtagGTGCACATCACGCAAGGTGACTATGATGGAAAAGCAGTAATCATCTCATGG
EST: gi|254344611|gb|GR855482.1|GR855482
EST:     TTGATCATGAAGCATTTGCACTTCCAAAGGGTTATAATGCACCTCAACAA                         GTGCACATCACGCAAGGTGACTATGATGGAAAAGCAGTAATCATCTCATGG
genomic: TTGATCATGAAGCATTTGCAGTTCCAAAGGGTTATAATGCACCTCAACAAgtaagtcttt ... tcctctgtagGTGCACATCACGCAAGGTGACTATGATGGAAAAGCAGTAATCATCTCATGG
EST: gi|192299966|gb|FG991812.1|FG991812
EST:     TTGATCATGAAGCATTTGCAGTTCCAAAGGGTTATAATGCACCTCAACAA                         GTGCACATCACGCAAGGTGACTATGATGGAAAAGCAGTAATCATCTCATGG
genomic: TTGATCATGAAGCATTTGCAGTTCCAAAGGGTTATAATGCACCTCAACAAgtaagtcttt ... tcctctgtagGTGCACATCACGCAAGGTGACTATGATGGAAAAGCAGTAATCATCTCATGG
EST: gi|6483220|gb|AW202396.1|AW202396
EST:     TTGATCATGAAGCATTTGCAGTTCCAAAGGGTTATAATGCACCTCAACAA                         GTGCACATCACGCAAGGTGACTATGATGGAAAAGCAGTAATCATCTCATGG
genomic: TTGATCATGAAGCATTTGCAGTTCCAAAGGGTTATAATGCACCTCAACAAgtaagtcttt ... tcctctgtagGTGCACATCACGCAAGGTGACTATGATGGAAAAGCAGTAATCATCTCATGG
EST: gi|209705502|gb|BW673523.1|BW673523
EST:     TTGATCATGAAGCATTTGCAGTTCCAAAGGGTTATAATGCACCTCAACAA                         GTGCACATCACGCAAGGTGACTATGATGGAAAAGCAGTAATCATCTCATGG
genomic: TTGATCATGAAGCATTTGCAGTTCCAAAGGGTTATAATGCACCTCAACAAgtaagtcttt ... tcctctgtagGTGCACATCACGCAAGGTGACTATGATGGAAAAGCAGTAATCATCTCATGG
EST: gi|120530447|gb|EH258580.1|EH258580
EST:     TTGATCATGAAGCATTTGCAGTTCCAAAGGGTTATAATGCACCTCAACAA                         GTGCACATCACGCAAGGTGACTATGATGGAAAAGCAGTAATCATCTCATGG
genomic: TTGATCATGAAGCATTTGCAGTTCCAAAGGGTTATAATGCACCTCAACAAgtaagtcttt ... tcctctgtagGTGCACATCACGCAAGGTGACTATGATGGAAAAGCAGTAATCATCTCATGG
EST: gi|254343421|gb|GR857125.1|GR857125
EST:     TTGATCATGAAGCATTTGCAGTTCCAAAGGGTTATAATGCACCTCAACAA                         GTGCACATCACGCAAGGTGACTATGATGGAAAAGCAGTAATCATCTCATGG
genomic: TTGATCATGAAGCATTTGCAGTTCCAAAGGGTTATAATGCACCTCAACAAgtaagtcttt ... tcctctgtagGTGCACATCACGCAAGGTGACTATGATGGAAAAGCAGTAATCATCTCATGG
EST: gi|213596260|gb|DB960217.1|DB960217
EST:     TTGATCATGAAGCATTTGCAGTTCCAAAGGGTTATAATGCACCTCAACAA                         GTGCACATCACGCAAGGTGACTATGATGGAAAAGCAGTAATCATCTCATGG
genomic: TTGATCATGAAGCATTTGCAGTTCCAAAGGGTTATAATGCACCTCAACAAgtaagtcttt ... tcctctgtagGTGCACATCACGCAAGGTGACTATGATGGAAAAGCAGTAATCATCTCATGG
EST: gi|209728180|gb|BW651615.1|BW651615
EST:     TTGATCATGAAGCATTTGCAGTTCCAAAGGGTTATAATGCACCTCAACAA                         GTGCACATCACGCAAGGTGACTATGATGGAAAAGCAGTAATCATCTCATGG
genomic: TTGATCATGAAGCATTTGCAGTTCCAAAGGGTTATAATGCACCTCAACAAgtaagtcttt ... tcctctgtagGTGCACATCACGCAAGGTGACTATGATGGAAAAGCAGTAATCATCTCATGG
EST: gi|192311725|gb|FK003586.1|FK003586
EST:     TTGATCATGAAGCATTTGCAGTTCCAAAGGGTTATAATGCACCTCAACAA                         GTGCACATCACGCAAGGTGACTATGATGGAAAAGCAGTAATCATCTCATGG
genomic: TTGATCATGAAGCATTTGCAGTTCCAAAGGGTTATAATGCACCTCAACAAgtaagtcttt ... tcctctgtagGTGCACATCACGCAAGGTGACTATGATGGAAAAGCAGTAATCATCTCATGG
EST: gi|209714892|gb|BW682057.1|BW682057
EST:     TTGATCATGAAGCATTTGCAGTTCCAAAGGGTTATAATGCACCTCAACAA                         GTGCACATCACGCAAGGTGACTATGATGGAAAAGCAGTAATCATCTCATGG
genomic: TTGATCATGAAGCATTTGCAGTTCCAAAGGGTTATAATGCACCTCAACAAgtaagtcttt ... tcctctgtagGTGCACATCACGCAAGGTGACTATGATGGAAAAGCAGTAATCATCTCATGG
EST: gi|19453471|gb|BM954881.1|BM954881
EST:     TTGATCATGAAGCATTTGCAGTTCCAAAGGGTTATAATGCACCTCAACAA                         GTGCACATCACGCAAGGTGACTATGATGGAAAAGCAGTAATCATCTCATGG
genomic: TTGATCATGAAGCATTTGCAGTTCCAAAGGGTTATAATGCACCTCAACAAgtaagtcttt ... tcctctgtagGTGCACATCACGCAAGGTGACTATGATGGAAAAGCAGTAATCATCTCATGG
EST: gi|8827970|gb|BE211700.1|BE211700
EST:     TTGATCAT-AA-CATTTGCAGTTCCAAAGGGTTATAATGCACCTCAACAA                         GTGCACATCACGCAAGGTGACTATGATGGAAAAGCAGTAATCATCTCATGG
genomic: TTGATCATGAAGCATTTGCAGTTCCAAAGGGTTATAATGCACCTCAACAAgtaagtcttt ... tcctctgtagGTGCACATCACGCAAGGTGACTATGATGGAAAAGCAGTAATCATCTCATGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaatctattcctttattccaatgaagctcagctgcattgattgattcctctgtagGTGCACATCACGCAAGGTGACTATGATGGAAAAGCAGTAATCATCTCATGGGTGACCACAGAAGAGCCAGGGCACAGCCATATACAGTATGGCACATCAG
                                            ttcctctgt  CT-rich tract
           tttatt  TA-rich tract