Sequence
atgc intronic sequence ATGC exonic sequenceTATGGAGGGTGAAAGCATGCGATCTGTTTTTGAGAGCTGGTTCATCGAGTACAAAGTTGATGTGATCTTTGCTGGCCATGTCCATGCTTATGAAAGATCAgtatgtttttcactttctgctcatttgttttggtcctctcacaacccagacaatatgtttcaataacttgtttgttatcttggtatcaataacttgagca...
Basic information
species | Glycine max |
transcript | GLYMA17G11790.2 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA17G11790.2 (Glycine max), 5'ss of exon 7
lower sequence: AT5G34850.1 (Arabidopsis thaliana), 5'ss of exon 6
TATGGAGGGTGAAAGCATGCGATCTGTTTTTGAGAGCTGGTTCATCGAGTACAAAGTTGATGTGATCTTTGCTGGCCATGTCCATGCTTATGAAAGATCAgtatgtttttcactttctgctcatttgttttggtcctctcacaacccagacaatatgtttcaataacttgtttgttatcttggtatcaataacttgagca
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CATGGAGGGTGAAAGCATGCGAGCAGCTTTTGAGGAGTGGTTTGTCCAACACAAAGTTGATGTAATCTTTGCTGGGCATGTTCATGCCTACGAGAGATCGgta---ctttcgtattac---cataagctccgcatagaatatatatgtttcattgtgttt-agtaaaatctttgttttgtt----tctccatctcag---
upper sequence: GLYMA17G11790.2 (Glycine max), 5'ss of exon 7
lower sequence: Vv11s0118g00240.t01 (Vitis vinifera), 5'ss of exon 7
TATGGAGGGTGAAAGCATGCGATCTGTTTTTGAGAGCTGGTTCATCGAGTACAAAGTTGATGTGATCTTTGCTGGCCATGTCCATGCTTATGAAAGATCAgtatgtttttcactttctgctcatttgttttggtcctctcaca-acccagacaatatgtttcaataacttgtttgttatcttggtatcaataacttgagca
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CATGGAGGGTGAAAGCATGCGAGCAGCCTTTGAGAGTTGGTTCATTCTTAACAAAGTTGATATAGTCTTTGCTGGTCATGTCCATGCTTATGAAAGATCGgtatggttctccatccctcctt-tttgtttgtttccttttttgtggggaaagaattaataatattcatgaaatagacaaaccaagtctatgcccttctgcc
upper sequence: GLYMA17G11790.2 (Glycine max), 5'ss of exon 7
lower sequence: Vv04s0008g06520.t01 (Vitis vinifera), 5'ss of exon 7
TATGGAGGGTGAAAGCATGCGATCTGTTTTTGAGAGCTGGTTCATCGAGTACAAAGTTGATGTGATCTTTGCTGGCCATGTCCATGCTTATGAAAGATCAgtatgtttttcactttctgctcatttgttttggtcctctcacaacccagacaatatgtttcaata-acttgtttgttatcttggtatcaataacttgagca----------
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TATGGAAGGTGAGAGTATGCGAGCTGTTTTTGAAAGTTGGTTCGTCCATGCAAAGGTTGATCTTATCTTTGCAGGTCATGTTCATGCCTATGAAAGATCGgtatg------gctattcattcatttgtttt--tacattttcaattcaaa--atatttgtagatagatctgattatt-cattcctatccatgggctgagtggaacctgataMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|14011825|gb|BG726747.1|BG726747EST: ACAAAGTTGATGTGATCTTTGCTGGCCATGTCCATGCTTATGAAAGATCA GCGGTAACAGGTATCCATTACCTAACAAATCAGCACCTGTTTACATAACAG
genomic: ACAAAGTTGATGTGATCTTTGCTGGCCATGTCCATGCTTATGAAAGATCAgtatgttttt ... aacataacagGCGGTAACAGGTATCCATTACCTAACAAATCAGCACCTGTTTACATAACAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TATGGAGGGTGAAAGCATGCGATCTGTTTTTGAGAGCTGGTTCATCGAGTACAAAGTTGATGTGATCTTTGCTGGCCATGTCCATGCTTATGAAAGATCAgtatgtttttcactttctgctcatttgttttggtcctctcacaacccagacaatatgtttcaataacttgtttgttatcttggtatcaataacttgagca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tcctctc