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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TACTACTATAGAATTGGAAGTGGTGATTCTTCTCGAGAATTTTGGTTCAAAACACCTCCCAAAGTTGATCCAGATTCTCCCTACAAATTTGGGATCATTGgtaagttatctgttattcaatgtttgttctactagaaaatagttttttgtatccttaattatagactctttctatttataatgcacaaagtgtctatcaggatttcgttttgctttgatttcccatgatttttattttgtagctctcacaaatgagtcattgcataaatattgcag

Basic information

species Glycine max
transcript GLYMA17G11790.2
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G11790.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv11s0118g00240.t01 (Vitis vinifera), 5'ss of exon 4
TACTACTATAGAATTGGAAGTGGTGATTCTTCTCGAGAATTTTGGTTCAAAACACCTCCCAAAGTTGATCCAGATTCTCCCTACAAATTTGGGATCATTGgtaagttatctgttattcaatgtttgttctactagaaaatagttttttgtatccttaattatagactctttctatttataatgcacaaagtgtctatcaggatttcgttttgctttgatttcccatgatttttattttgtagctctcacaaatgagtcattgcataaatattgcag
||||| || |  |||||||||||  |||||||||  |||||||||||  ||||||||||  |  ||||||| ||| |||| |||| |||||| || |||||| |||  | |  | ||  ||||      |  || |  | |  |      ||  ||  ||| | |||    |   ||    | | |  | |||     ||   |                                                                        
TACTATTACAAGATTGGAAGTGGCAATTCTTCTCAGGAATTTTGGTTTCAAACACCTCCTGAGATTGATCCTGATGCTCCTTACATATTTGGAATTATTGgtgagtggtttcctttt--atgtccagatttttaaaggaaaaatcagatcatttttccttacatacttgaac--attgggctactctga-tgttggatagacatg-----------------------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193432592|gb|FK394278.1|FK394278
EST:     AACACCTCCCAAAGTTGATCCAGATTCTCCCTACAAATTTGGGATCATTG                         GTGATTTGGGG
genomic: AACACCTCCCAAAGTTGATCCAGATTCTCCCTACAAATTTGGGATCATTGgtaagttatc ... aatattgcagGTGATTTGGGG
EST: gi|193689287|gb|FK632660.1|FK632660
EST:     AACACCTCCCAAAGTTGATCCAGATTCTCCCTACAAATTTGGGATCATTG                         GTGATTTGGGGCAAACGTTTAATTCTCTTTCCACCCTTGAGCATTATATAC
genomic: AACACCTCCCAAAGTTGATCCAGATTCTCCCTACAAATTTGGGATCATTGgtaagttatc ... aatattgcagGTGATTTGGGGCAAACGTTTAATTCTCTTTCCACCCTTGAGCATTATATAC
EST: gi|193718891|gb|FK654821.1|FK654821
EST:     AACACCTCCCAAAGTTGATCCAGATTCTCCCTACAAATTTGGGATCATTG                         GTGATTTGGGG
genomic: AACACCTCCCAAAGTTGATCCAGATTCTCCCTACAAATTTGGGATCATTGgtaagttatc ... aatattgcagGTGATTTGGGG
EST: gi|207680921|gb|GD662816.1|GD662816
EST:     AACACCTCCCAAAGTTGATCCAGATTCTCCCTACAAATTTGGGATCATTG                         GTGATTTGGGG
genomic: AACACCTCCCAAAGTTGATCCAGATTCTCCCTACAAATTTGGGATCATTGgtaagttatc ... aatattgcagGTGATTTGGGG
EST: gi|254324086|gb|GR840511.1|GR840511
EST:     TCCCTACAAATTTGGGATCATTG                         GTGATTTGTGGCAAACGTTTAATTCTCTTTCCACCCTTGAGCATTATATAC
genomic: TCCCTACAAATTTGGGATCATTGgtaagttatc ... aatattgcagGTGATTTGGGGCAAACGTTTAATTCTCTTTCCACCCTTGAGCATTATATAC
EST: gi|151407026|gb|EV276841.1|EV276841
EST:     ACACCTCCCAAAGTTGATCCAGATTCTCCCTACAAATTTGGGGATCATTG                         GTGATTTGGGGCAAACGTTTAATTCTCTTTCCACCCTTGAGCATTATATAC
genomic: ACACCTCCCAAAGTTGATCCAGATTCTCCCTACAAATTTGGG-ATCATTGgtaagttatc ... aatattgcagGTGATTTGGGGCAAACGTTTAATTCTCTTTCCACCCTTGAGCATTATATAC
EST: gi|193593904|gb|FK546146.1|FK546146
EST:     AACACCTCCCAAAGTTGATCCAGATTCTCCCTACAAATTTGGGATCATTG                         GTGATTTGGGGCAAACGTTTAATTCTCTTTCCACCCTTGAGCATTATATAC
genomic: AACACCTCCCAAAGTTGATCCAGATTCTCCCTACAAATTTGGGATCATTGgtaagttatc ... aatattgcagGTGATTTGGGGCAAACGTTTAATTCTCTTTCCACCCTTGAGCATTATATAC
EST: gi|207802621|gb|GD773904.1|GD773904
EST:     AACACCTCCCAAAGTTGATCCAGATTCTCCCTACAAATTTGGGATCATTG                         GTGATTTGGGGCAAACGTTTAATTCTCTTTCCACCCTTGAGCATTATATAC
genomic: AACACCTCCCAAAGTTGATCCAGATTCTCCCTACAAATTTGGGATCATTGgtaagttatc ... aatattgcagGTGATTTGGGGCAAACGTTTAATTCTCTTTCCACCCTTGAGCATTATATAC
EST: gi|208173897|gb|GD966808.1|GD966808
EST:     AACACCTCCCAAAGTTGATCCAGATTCTCCCTACAAATTTGGGATCATTG                         GTGATTTGGGGCAAACGTTTAATTCTCTTTCCACCCTTGAGCATTATATAC
genomic: AACACCTCCCAAAGTTGATCCAGATTCTCCCTACAAATTTGGGATCATTGgtaagttatc ... aatattgcagGTGATTTGGGGCAAACGTTTAATTCTCTTTCCACCCTTGAGCATTATATAC
EST: gi|208165423|gb|GD961591.1|GD961591
EST:     AACACCTCCCAAGGTTGATCCAGATTCTCCCTACAAATTTGGGATCATTG                         GTGATTTGGGG
genomic: AACACCTCCCAAAGTTGATCCAGATTCTCCCTACAAATTTGGGATCATTGgtaagttatc ... aatattgcagGTGATTTGGGG
EST: gi|23726031|gb|BU760993.1|BU760993
EST:     AACACCTCCCAAAGTTGATCCAGATTCTCCCTACAAATTTGGGATCATTG                         GTGATTTGGGGCAAACGTTTAATTCTCTTTCCACCCTTGAGCATTATATAC
genomic: AACACCTCCCAAAGTTGATCCAGATTCTCCCTACAAATTTGGGATCATTGgtaagttatc ... aatattgcagGTGATTTGGGGCAAACGTTTAATTCTCTTTCCACCCTTGAGCATTATATAC
EST: gi|254344611|gb|GR855482.1|GR855482
EST:     AACACCTCCCAAAGTTGATCCAGATTCTCCCTACAAATTTGGGATCATTG                         GTGATTTGGGGCAAACGTTTAATTCTCTTTCCACCCTTGAGCATTATATAC
genomic: AACACCTCCCAAAGTTGATCCAGATTCTCCCTACAAATTTGGGATCATTGgtaagttatc ... aatattgcagGTGATTTGGGGCAAACGTTTAATTCTCTTTCCACCCTTGAGCATTATATAC
EST: gi|192299966|gb|FG991812.1|FG991812
EST:     AACACCTCCCAAAGTTGATCCAGATTCTCCCTACAAATTTGGGATCATTG                         GTGATTTGGGGCAAACGTTTAATTCTCTTTCCACCCTTGAGCATTATATAC
genomic: AACACCTCCCAAAGTTGATCCAGATTCTCCCTACAAATTTGGGATCATTGgtaagttatc ... aatattgcagGTGATTTGGGGCAAACGTTTAATTCTCTTTCCACCCTTGAGCATTATATAC
EST: gi|208111807|gb|GD913305.1|GD913305
EST:     AACACCTCCCAAAGTTGATCCAGATTCTCCCTACAAATTTGGGATCATTG                         GTGATTTGGGGCAAACGTTTAATTCTCTTTCCACCCTTGAGCATTATATAC
genomic: AACACCTCCCAAAGTTGATCCAGATTCTCCCTACAAATTTGGGATCATTGgtaagttatc ... aatattgcagGTGATTTGGGGCAAACGTTTAATTCTCTTTCCACCCTTGAGCATTATATAC
EST: gi|193563452|gb|FK521341.1|FK521341
EST:     TCCCAAAGTTGATCCAGATTCTCCCTACAAATTTGGGATCATTG                         GTGATTTGGGGCAAACGTTTAATTCTCTTTCCACCCTTGAGCATTATATAC
genomic: TCCCAAAGTTGATCCAGATTCTCCCTACAAATTTGGGATCATTGgtaagttatc ... aatattgcagGTGATTTGGGGCAAACGTTTAATTCTCTTTCCACCCTTGAGCATTATATAC
EST: gi|6727109|gb|AW311463.1|AW311463
EST:     AACACCTCCCAAAGTTGATCCAGATTCTCCCTACAAATTTGGGATCATTG                         GTGATTTGGGGCAAACGTTTAATTCTCTTTCCACCCTTGAGCATTATATAC
genomic: AACACCTCCCAAAGTTGATCCAGATTCTCCCTACAAATTTGGGATCATTGgtaagttatc ... aatattgcagGTGATTTGGGGCAAACGTTTAATTCTCTTTCCACCCTTGAGCATTATATAC
EST: gi|193492541|gb|FK457457.1|FK457457
EST:     TCCCAAAGTTGATCCAGATTCTCCCTACAAATTTGGGATCATTG                         GTGATTTGGGGCAAACGTTTAATTCTCTTTCCACCCTTGAGCATTATATAC
genomic: TCCCAAAGTTGATCCAGATTCTCCCTACAAATTTGGGATCATTGgtaagttatc ... aatattgcagGTGATTTGGGGCAAACGTTTAATTCTCTTTCCACCCTTGAGCATTATATAC
EST: gi|120530447|gb|EH258580.1|EH258580
EST:     AACACCTCCCAAAGTTGATCCAGATTCTCCCTACAAATTTGGGATCCTTG                         GTGATTTGGGGCAAACGTTTAATTCTCTTTCCACCCT
genomic: AACACCTCCCAAAGTTGATCCAGATTCTCCCTACAAATTTGGGATCATTGgtaagttatc ... aatattgcagGTGATTTGGGGCAAACGTTTAATTCTCTTTCCACCCT
EST: gi|193461361|gb|FK428074.1|FK428074
EST:     AACACCTCCCAAAGTTGATCCAGATTCTCCCTACAAATTTGGGATCATTG                         -TGATTTGGGG
genomic: AACACCTCCCAAAGTTGATCCAGATTCTCCCTACAAATTTGGGATCATTGgtaagttatc ... aatattgcagGTGATTTGGGG
EST: gi|254343421|gb|GR857125.1|GR857125
EST:     AACACCTCCCAAAGTTGATCCAGATTCTCCCTACAAATTTGGGATCATTG                         GTGATTTGGGGCAAACGTTTAATTCTCTTTCCACCCTTGAGCATTATATAC
genomic: AACACCTCCCAAAGTTGATCCAGATTCTCCCTACAAATTTGGGATCATTGgtaagttatc ... aatattgcagGTGATTTGGGGCAAACGTTTAATTCTCTTTCCACCCTTGAGCATTATATAC
EST: gi|209728180|gb|BW651615.1|BW651615
EST:     AACACCTCCCAAAGTTGATCCAGATTCTCCCTACAAATTTGGGATCATTG                         GTGATTTGGGGCAAACGTTTAATTCTCTTTCCACCCTTGAGCATTATATAC
genomic: AACACCTCCCAAAGTTGATCCAGATTCTCCCTACAAATTTGGGATCATTGgtaagttatc ... aatattgcagGTGATTTGGGGCAAACGTTTAATTCTCTTTCCACCCTTGAGCATTATATAC
EST: gi|192311725|gb|FK003586.1|FK003586
EST:     AACACCTCCCAAAGTTGATCCAGATTCTCCCTACAAATTTGGGATCATTG                         GTGATTTGGGGCAAACGTTTAATTCTCTTTCCACCCTTGAGCATTATATAC
genomic: AACACCTCCCAAAGTTGATCCAGATTCTCCCTACAAATTTGGGATCATTGgtaagttatc ... aatattgcagGTGATTTGGGGCAAACGTTTAATTCTCTTTCCACCCTTGAGCATTATATAC
EST: gi|19453471|gb|BM954881.1|BM954881
EST:     AACACCTCCCAAAGTTGATCCAGATTCTCCCTACAAATTTGGGATCATTG                         GTGATTTGGGGCAAACGTTTAATTCTCTTTCCACCCTTGAGCATTATATAC
genomic: AACACCTCCCAAAGTTGATCCAGATTCTCCCTACAAATTTGGGATCATTGgtaagttatc ... aatattgcagGTGATTTGGGGCAAACGTTTAATTCTCTTTCCACCCTTGAGCATTATATAC
EST: gi|193702858|gb|FK639206.1|FK639206
EST:     TCCCAAAGTTGTATTCCTAGATTCTCCCTACAAATTTGGGATCATTG                         GTGATTTGGGGCAAACGTTTAATTCTCTTTCCACCCTTGAGCATTATATAC
genomic: TCCCAAAGTTG-A-TCC-AGATTCTCCCTACAAATTTGGGATCATTGgtaagttatc ... aatattgcagGTGATTTGGGGCAAACGTTTAATTCTCTTTCCACCCTTGAGCATTATATAC