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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaataatggacagaatcttattttaaatttggttgtttgcacaaatatattaagtgtctgattccttgtaatttattgttccattgaacagGGCGGTTGAAAACAGAGTTATAGTGTGTGGATTATTATATAGCCATGTTACTACAACAACAAAGACTTTGGAATTTTCTTGTTGACTGCACAATTTAACT

Basic information

species Glycine max
transcript GLYMA14G10180.1
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58022718|gb|CX709459.1|CX709459
EST:     TGGAATTGGATACGATTCTAATACAGCACTTGACAACTTGGAACCCAATG                         GGCGGTTGAAAACAGAGTTATAGTGTGTGGATTATTATATAGCCATGTTAC
genomic: TGGAATTGGATACGATTCTAATACAGCACTTGACAACTTGGAACCCAATGgtaataatgg ... cattgaacagGGCGGTTGAAAACAGAGTTATAGTGTGTGGATTATTATATAGCCATGTTAC
EST: gi|58014517|gb|CX701259.1|CX701259
EST:     TGGAATTGGATACGATTCTAATACAGCACTTGACAACTTGGAACCCAATG                         GGCGGTTGAAAACAGAGTTATAGTGTGTGGATTATTATATAGCCATGTTAC
genomic: TGGAATTGGATACGATTCTAATACAGCACTTGACAACTTGGAACCCAATGgtaataatgg ... cattgaacagGGCGGTTGAAAACAGAGTTATAGTGTGTGGATTATTATATAGCCATGTTAC
EST: gi|209713299|gb|BW684386.1|BW684386
EST:     CAACTTGGAACCCAATG                         GGCGGTTGAAAACAGAGTTATAGTGTGTGGATTATTATATAGCCATGTTAC
genomic: CAACTTGGAACCCAATGgtaataatgg ... cattgaacagGGCGGTTGAAAACAGAGTTATAGTGTGTGGATTATTATATAGCCATGTTAC
EST: gi|58019678|gb|CX706420.1|CX706420
EST:     TGGAATTGGATACGATTCTAATACAGCACTTGACAACTTGGAACCCAATG                         GGCGGTTGAAAACAGAGTTATAGTGTGTGGATTATTATATAGCCATGTTAC
genomic: TGGAATTGGATACGATTCTAATACAGCACTTGACAACTTGGAACCCAATGgtaataatgg ... cattgaacagGGCGGTTGAAAACAGAGTTATAGTGTGTGGATTATTATATAGCCATGTTAC
EST: gi|254342153|gb|GR853290.1|GR853290
EST:     TGGAATTGGATACGATTCTAATACAGCACTTGACAACTTG-AACCCAATG                         GGCGGTTGAAAACAGAGTTATAGTGTGTGGATTATTATATAGCCATGTTAC
genomic: TGGAATTGGATACGATTCTAATACAGCACTTGACAACTTGGAACCCAATGgtaataatgg ... cattgaacagGGCGGTTGAAAACAGAGTTATAGTGTGTGGATTATTATATAGCCATGTTAC
EST: gi|58018231|gb|CX704973.1|CX704973
EST:     TGGAATTGGATACGATTCTAATACAGCACTTGACAACTTGGAACCCAATG                         GGCGGTTGAAAACAGAGTTATAGTGTGTGGATTATTATATAGCCATGTTAC
genomic: TGGAATTGGATACGATTCTAATACAGCACTTGACAACTTGGAACCCAATGgtaataatgg ... cattgaacagGGCGGTTGAAAACAGAGTTATAGTGTGTGGATTATTATATAGCCATGTTAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgcacaaatatattaagtgtctgattccttgtaatttattgttccattgaacagGGCGGTTGAAAACAGAGTTATAGTGTGTGGATTATTATATAGCCATGTTACTACAACAACAAAGACTTTGGAATTTTCTTGTTGACTGCACAATTTAACT
                   gtctgat  putative branch site (score: 4)
                                       ttgttcc  putative PPT
      aaatatattaagtgt  TA-rich tract