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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgaaagtagtgcaatcttttatgctttcaatttaccatttaaaactgaatagtgcatgttaagagatattttatgataactcaataacacaacttttcttgtctgttccattattgtggttttgtgactagtcaatttatcaaagaaatattttgcagTTTTTGTCCATGAAACTTGCCACCGTGAACCCAGAACTGAACTTTGATGTGGACAGGATCCTATCCAAGGAT

Basic information

species Glycine max
transcript GLYMA14G10180.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA14G10180.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv18s0001g08600.t01 (Vitis vinifera), 3'ss of exon 4
gtatgaaagtagtgcaatcttttatgctttcaatttaccatttaaaactgaatagtgcatgttaagagatattttatgataactcaataacacaacttttcttgtctgttccattattgtggttttgtgactagtcaatttatcaaagaaatattttgcagTTTTTGTCCATGAAACTTGCCACCGTGAACCCAGAACTGAACTTTGATGTGGACAGGATCCTATCCAAGGAT
                                                    | |  |||  |||||  ||  | |    | | || |     || | || | |  | |     | || || ||  ||||  |     ||  |          | ||||||||| |||| |||||||||||||| || || |||||||||||| ||||| | ||  |  | ||||| || |||
--------------------------------------------------gtttggacat-ctaagaattaaatca----accccactggtgtaattattttagcttttatatgttttatgattcagtgatgacattcttgcttt------cctattgcagTTTCTGTCAATGAAACTTGCCACTGTCAATCCAGAACTGAACATTGATATAGAACGACTTCTATCGAAAGAT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15285748|gb|BI469639.1|BI469639
EST:     TGCTTGATGAGATAATAAACTACGTGCAATCACTTCAGCAACAGGTTGAG                         TTTTTGTCCATGAAACTTGCCACCGTGAACCCAGAACTGAACTTTGATGTG
genomic: TGCTTGATGAGATAATAAACTACGTGCAATCACTTCAGCAACAGGTTGAGgtatgaaagt ... tattttgcagTTTTTGTCCATGAAACTTGCCACCGTGAACCCAGAACTGAACTTTGATGTG
EST: gi|58014517|gb|CX701259.1|CX701259
EST:     TGCTTGATGAAATAATAAACTACGTGCAATCACTTCAGCAACAGGTTGAG                         TTTTTGTCCATGAAACTTGCCACCGTGAACCCAGAACTGAACTTTGATGTG
genomic: TGCTTGATGAGATAATAAACTACGTGCAATCACTTCAGCAACAGGTTGAGgtatgaaagt ... tattttgcagTTTTTGTCCATGAAACTTGCCACCGTGAACCCAGAACTGAACTTTGATGTG
EST: gi|151399817|gb|EV269688.1|EV269688
EST:     TGCTTGATGAGATAATAAACTACGTGCAATCACTTCAGCAACAGGTTGAG                         TTTTTGTCCATGAAACTTGCCACCGTGAACCCAGAACTGAACTTTGATGTG
genomic: TGCTTGATGAGATAATAAACTACGTGCAATCACTTCAGCAACAGGTTGAGgtatgaaagt ... tattttgcagTTTTTGTCCATGAAACTTGCCACCGTGAACCCAGAACTGAACTTTGATGTG
EST: gi|151401288|gb|EV271102.1|EV271102
EST:     TGCTTGATGAGATAATAAACTACGTGCAATCACTTCAGCAACAGGTTGAG                         TTTTTGTCCATGAAACTTGCCACCGTGAACCCAGAACTGAACTTTGATGTG
genomic: TGCTTGATGAGATAATAAACTACGTGCAATCACTTCAGCAACAGGTTGAGgtatgaaagt ... tattttgcagTTTTTGTCCATGAAACTTGCCACCGTGAACCCAGAACTGAACTTTGATGTG
EST: gi|13252195|gb|BG363098.1|BG363098
EST:     TGCTTGATGAGATAATAAACTACGTGCAATCACTTCAGCAACAGGTTGAG                         TTTTTGTCCATGAAACTTGCCACCGTGAACCCAGAACTGAACTTTGATGTG
genomic: TGCTTGATGAGATAATAAACTACGTGCAATCACTTCAGCAACAGGTTGAGgtatgaaagt ... tattttgcagTTTTTGTCCATGAAACTTGCCACCGTGAACCCAGAACTGAACTTTGATGTG
EST: gi|254342153|gb|GR853290.1|GR853290
EST:     TGCTTGATGAGATAATAAACTACGTGCAATCACTTCAGCAACAGGTTGAG                         TTTTTGTCCATGAAACTTGCCACCGTGAACCCAGAACTGAACTTTGATGTG
genomic: TGCTTGATGAGATAATAAACTACGTGCAATCACTTCAGCAACAGGTTGAGgtatgaaagt ... tattttgcagTTTTTGTCCATGAAACTTGCCACCGTGAACCCAGAACTGAACTTTGATGTG
EST: gi|58018231|gb|CX704973.1|CX704973
EST:     TGCTTGATGAGATAATAAACTACGTGCAATCACTTCAGCAACAGGTTGAG                         TTTTTGTCCATGAAACTTGCCACCGTGAACCCAGAACTGAACTTTGATGTG
genomic: TGCTTGATGAGATAATAAACTACGTGCAATCACTTCAGCAACAGGTTGAGgtatgaaagt ... tattttgcagTTTTTGTCCATGAAACTTGCCACCGTGAACCCAGAACTGAACTTTGATGTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgttccattattgtggttttgtgactagtcaatttatcaaagaaatattttgcagTTTTTGTCCATGAAACTTGCCACCGTGAACCCAGAACTGAACTTTGATGTGGACAGGATCCTATCCAAGGAT
                            tcaatttatcaaagaa  TA-rich tract