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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATAACTGGCAAAGCTGTAATGCTTGATGAGATAATAAACTACGTGCAATCACTTCAGCAACAGGTTGAGgtatgaaagtagtgcaatcttttatgctttcaatttaccatttaaaactgaatagtgcatgttaagagatattttatgataactcaataacacaacttttcttgtctgttccattattgtggttttgtgactagtcaatttatcaaagaaatattttgcag

Basic information

species Glycine max
transcript GLYMA14G10180.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA14G10180.1 (Glycine max), 5'ss of exon 4
lower sequence: LOC_Os06g16400.2 (Oryza sativa), 5'ss of exon 5
ATAACTGGCAAAGCTGTAATGCTTGATGAGATAATAAACTACGTGCAATCACTTCAGCAACAGGTTGAGgtatgaaagtagtgcaatcttttatgctttcaatttaccatttaaaactgaatagtgcatgttaagagatattttatgataactcaataacacaacttttcttgtctgttccattattgtggttttgtgactagtcaatttatcaaagaaatattttgcag
 ||||||| || ||||| ||||| ||||||||||| ||||| || |||||| | |||   |||||||||||||||   | ||  ||  | |   ||     |||| |  ||| |   || ||||| | || |  ||  || | |   ||| |  |      ||  ||     |                                                         
GTAACTGGTAAGGCTGTTATGCTGGATGAGATAATTAACTATGTTCAATCATTACAGAGGCAGGTTGAGgtatgatgtttgtaaaacttgtagggcc----attttcagttttac-ttgcatagtcc-tgctgcgatgtaatctggtatacccaatgtgtgcatgttgggcag---------------------------------------------------------

upper sequence: GLYMA14G10180.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv18s0001g08600.t01 (Vitis vinifera), 5'ss of exon 4
ATAACTGGCAAAGCTGTAATGCTTGATGAGATAATAAACTACGTGCAATCACTTCAGCAACAGGTTGAGgtatgaaagtagtgcaatcttttatgctttcaatttaccatttaaaactgaatagtgcatgttaagagatattttatgataactcaataacacaacttttcttgtctgttccattattgtggttttgtgactagtcaatttatcaaagaaatattttgcag
|| ||||| || || ||||||||||||||||| || || || || || ||||| || |||||||||||||||||  | |  |  | |||  |||     || ||     | |    |||  | ||  | | |     |||||| |  | || | |    | || |  | ||| | ||                                                     
ATTACTGGGAAGGCAGTAATGCTTGATGAGATTATCAATTATGTACAGTCACTGCAACAACAGGTTGAGgtatgccattgttcaactctaatataggggca-ttagtggtgttgtgctg--ttgtttaagatt---tatatttaagaaaaagttagc--ctcatcaatccttatatg-----------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15285748|gb|BI469639.1|BI469639
EST:     TGCTTGATGAGATAATAAACTACGTGCAATCACTTCAGCAACAGGTTGAG                         TTTTTGTCCATGAAACTTGCCACCGTGAACCCAGAACTGAACTTTGATGTG
genomic: TGCTTGATGAGATAATAAACTACGTGCAATCACTTCAGCAACAGGTTGAGgtatgaaagt ... tattttgcagTTTTTGTCCATGAAACTTGCCACCGTGAACCCAGAACTGAACTTTGATGTG
EST: gi|58014517|gb|CX701259.1|CX701259
EST:     TGCTTGATGAAATAATAAACTACGTGCAATCACTTCAGCAACAGGTTGAG                         TTTTTGTCCATGAAACTTGCCACCGTGAACCCAGAACTGAACTTTGATGTG
genomic: TGCTTGATGAGATAATAAACTACGTGCAATCACTTCAGCAACAGGTTGAGgtatgaaagt ... tattttgcagTTTTTGTCCATGAAACTTGCCACCGTGAACCCAGAACTGAACTTTGATGTG
EST: gi|151399817|gb|EV269688.1|EV269688
EST:     TGCTTGATGAGATAATAAACTACGTGCAATCACTTCAGCAACAGGTTGAG                         TTTTTGTCCATGAAACTTGCCACCGTGAACCCAGAACTGAACTTTGATGTG
genomic: TGCTTGATGAGATAATAAACTACGTGCAATCACTTCAGCAACAGGTTGAGgtatgaaagt ... tattttgcagTTTTTGTCCATGAAACTTGCCACCGTGAACCCAGAACTGAACTTTGATGTG
EST: gi|151401288|gb|EV271102.1|EV271102
EST:     TGCTTGATGAGATAATAAACTACGTGCAATCACTTCAGCAACAGGTTGAG                         TTTTTGTCCATGAAACTTGCCACCGTGAACCCAGAACTGAACTTTGATGTG
genomic: TGCTTGATGAGATAATAAACTACGTGCAATCACTTCAGCAACAGGTTGAGgtatgaaagt ... tattttgcagTTTTTGTCCATGAAACTTGCCACCGTGAACCCAGAACTGAACTTTGATGTG
EST: gi|13252195|gb|BG363098.1|BG363098
EST:     TGCTTGATGAGATAATAAACTACGTGCAATCACTTCAGCAACAGGTTGAG                         TTTTTGTCCATGAAACTTGCCACCGTGAACCCAGAACTGAACTTTGATGTG
genomic: TGCTTGATGAGATAATAAACTACGTGCAATCACTTCAGCAACAGGTTGAGgtatgaaagt ... tattttgcagTTTTTGTCCATGAAACTTGCCACCGTGAACCCAGAACTGAACTTTGATGTG
EST: gi|254342153|gb|GR853290.1|GR853290
EST:     TGCTTGATGAGATAATAAACTACGTGCAATCACTTCAGCAACAGGTTGAG                         TTTTTGTCCATGAAACTTGCCACCGTGAACCCAGAACTGAACTTTGATGTG
genomic: TGCTTGATGAGATAATAAACTACGTGCAATCACTTCAGCAACAGGTTGAGgtatgaaagt ... tattttgcagTTTTTGTCCATGAAACTTGCCACCGTGAACCCAGAACTGAACTTTGATGTG
EST: gi|58018231|gb|CX704973.1|CX704973
EST:     TGCTTGATGAGATAATAAACTACGTGCAATCACTTCAGCAACAGGTTGAG                         TTTTTGTCCATGAAACTTGCCACCGTGAACCCAGAACTGAACTTTGATGTG
genomic: TGCTTGATGAGATAATAAACTACGTGCAATCACTTCAGCAACAGGTTGAGgtatgaaagt ... tattttgcagTTTTTGTCCATGAAACTTGCCACCGTGAACCCAGAACTGAACTTTGATGTG