Skip to another splice site:
1  
 5'  3'   
2  
 5'  3'   
3  
 5'  3'   
4  
 5'  3'   
5  
 5'  3'   
6  
 5'  3'   
7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgatatgaatatcatgattgtgttagcgatttctcaagaaactatgatgatgcctctgcatactaactttctctttggttgttaaactatgatgatgtctttggtttctcttagATAACTGGCAAAGCTGTAATGCTTGATGAGATAATAAACTACGTGCAATCACTTCAGCAACAGGTTGAG

Basic information

species Glycine max
transcript GLYMA14G10180.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15285748|gb|BI469639.1|BI469639
EST:     TTAGTGAGCGAATGAGGTTGCTTCAAGAACTTGTTCCAGGATGCAACAAG                         ATAACTGGCAAAGCTGTAATGCTTGATGAGATAATAAACTACGTGCAATCA
genomic: TTAGTGAGCGAATGAGGTTGCTTCAAGAACTTGTTCCAGGATGCAACAAGgtgatatgaa ... tttctcttagATAACTGGCAAAGCTGTAATGCTTGATGAGATAATAAACTACGTGCAATCA
EST: gi|58014517|gb|CX701259.1|CX701259
EST:     GTGAGCGAATGAGGTTGCTTCAAGAACTTGTTCCAGGATGCAACAAG                         ATAACTGGCAAAGCTGTAATGCTTGATGAAATAATAAACTACGTGCAATCA
genomic: GTGAGCGAATGAGGTTGCTTCAAGAACTTGTTCCAGGATGCAACAAGgtgatatgaa ... tttctcttagATAACTGGCAAAGCTGTAATGCTTGATGAGATAATAAACTACGTGCAATCA
EST: gi|151399817|gb|EV269688.1|EV269688
EST:     TTAGTGAGCGAATGAGGTTGCTTCAAGAACTTGTTCCAGGATGCAACAAG                         ATAACTGGCAAAGCTGTAATGCTTGATGAGATAATAAACTACGTGCAATCA
genomic: TTAGTGAGCGAATGAGGTTGCTTCAAGAACTTGTTCCAGGATGCAACAAGgtgatatgaa ... tttctcttagATAACTGGCAAAGCTGTAATGCTTGATGAGATAATAAACTACGTGCAATCA
EST: gi|151401288|gb|EV271102.1|EV271102
EST:     TTAGTGAGCGAATGAGGTTGCTTCAAGAACTTGTTCCAGGATGCAACAAG                         ATAACTGGCAAAGCTGTAATGCTTGATGAGATAATAAACTACGTGCAATCA
genomic: TTAGTGAGCGAATGAGGTTGCTTCAAGAACTTGTTCCAGGATGCAACAAGgtgatatgaa ... tttctcttagATAACTGGCAAAGCTGTAATGCTTGATGAGATAATAAACTACGTGCAATCA
EST: gi|13252195|gb|BG363098.1|BG363098
EST:     TTAGTGAGCGAATGAGGTTGCTTCAAGAACTTGTTCCAGGATGCAACAAG                         ATAACTGGCAAAGCTGTAATGCTTGATGAGATAATAAACTACGTGCAATCA
genomic: TTAGTGAGCGAATGAGGTTGCTTCAAGAACTTGTTCCAGGATGCAACAAGgtgatatgaa ... tttctcttagATAACTGGCAAAGCTGTAATGCTTGATGAGATAATAAACTACGTGCAATCA
EST: gi|254342153|gb|GR853290.1|GR853290
EST:     TGAGTGAGCGAATGAGGTTGCTTCAAGAACTTGTTCCAGGATGCAACAAG                         ATAACTGGCAAAGCTGTAATGCTTGATGAGATAATAAACTACGTGCAATCA
genomic: TTAGTGAGCGAATGAGGTTGCTTCAAGAACTTGTTCCAGGATGCAACAAGgtgatatgaa ... tttctcttagATAACTGGCAAAGCTGTAATGCTTGATGAGATAATAAACTACGTGCAATCA
EST: gi|58018231|gb|CX704973.1|CX704973
EST:     TTAGTGAGCGAATGAGGTTGCTTCAAGAACTTGTTCCAGGATGCAACAAG                         ATAACTGGCAAAGCTGTAATGCTTGATGAGATAATAAACTACGTGCAATCA
genomic: TTAGTGAGCGAATGAGGTTGCTTCAAGAACTTGTTCCAGGATGCAACAAGgtgatatgaa ... tttctcttagATAACTGGCAAAGCTGTAATGCTTGATGAGATAATAAACTACGTGCAATCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atactaactttctctttggttgttaaactatgatgatgtctttggtttctcttagATAACTGGCAAAGCTGTAATGCTTGATGAGATAATAAACTACGTGCAATCACTTCAGCAACAGGTTGAG
 tactaac  putative branch site (score: 0)
 tctttggtttctctt  putative PPT
 ttaaactat  TA-rich tract